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Name: | uxaCA |
Gene(s): | uxaA, uxaC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [PAGTSBP] Products of adjacent genes in the same biological process |
Promoter | |
Name: | uxaCp1 |
+1: | 3244843 |
Distance from start of the gene: | 102 |
Sequence: |
ggcgcggcctgcagcgagatttaccactttgagagtaatttttttaactacgtttattgaTctaactcacgaaaatatctt |
Evidence: | [TIM] |
Reference(s): | [1] Yamamoto K., et al., 2008 |
Name: | uxaCA |
Gene(s): | uxaA, uxaC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [IEP] Inferred from expression pattern |
Reference(s): |
[2] Hugouvieux-Cotte-Pattat N., et al., 1982 [3] Mata-Gilsinger M., et al., 1983 [4] Nemoz G., et al., 1976 |
Promoter | |
Name: | uxaCp |
+1: | 3244857 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 116 |
Sequence: |
gcaaggccagtactggcgcggcctgcagcgagatttaccactttgagagtaatttttttaActacgtttattgatctaact -35 -10 +1 |
Evidence: | [AIPP] |
Reference(s): | [5] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | CRP-cAMP | activator | uxaCp | 3244952 | 3244974 | -105.5 | atacaactttAAAAGGTGAGAGCCATCACAAATgtgggaatat | nd | [AIBSCS], [APIORCISFBSCS], [CV(GEA)], [GEA] | [7], [8], [9] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | ExuR | repressor | uxaCp | 3244795 | 3244812 | 54.5 | cggactctggAAATTGGTGTGATAACTTtgtcagcatc | nd | [AIBSCS] | [8] |
proximal | ExuR | repressor | uxaCp | 3244850 | 3244867 | -1.5 | ctttgagagtAATTTTTTTAACTACGTTtattgatcta | nd | [AIBSCS] | [7], [8] |
proximal | ExuR | repressor | uxaCp | 3244874 | 3244891 | -25.5 | cgcggcctgcAGCGAGATTTACCACTTTgagagtaatt | nd | [AIBSCS] | [8] |
remote | ExuR | repressor | uxaCp | 3244976 | 3244993 | -127.5 | ggcagaaagaTAACTTGTCATACAACTTtaaaaggtga | nd | [AIBSCS], [CV(GEA)], [GEA] | [6], [7] |
Note(s): | 1By making use of microarray analysis, Constantinidou et al. Constantinidou C,2006 concluded that FNR activates uxaCA operon expression. They also identified a putative FNR-binding site upstream of the operon, but the sequence was not reported.6By making use of microarray analysis, Constantinidou et al. Constantinidou C,2006 concluded that FNR activates uxaCA operon expression. They also identified a putative FNR-binding site upstream of the operon, but the sequence was not reported. |
Reference(s) |
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