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Name: | exuR |
Gene(s): | exuR Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [IEP] Inferred from expression pattern [IMP] Inferred from mutant phenotype |
Reference(s): | [1] Hugovieux-Cotte-Pattat N., et al., 1982 |
Promoter | |
Name: | exuRp2 |
+1: | 3246618 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 34 |
Sequence: |
ccttctcaggcggctttttcatcactgcgagtagagctaaactcgcaaaagtggtataacAaatatagtctgccgtatcat |
Evidence: | [TIM] |
Reference(s): | [2] Tutukina MN., et al., 2016 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | CRP-cAMP1 | repressor | exuRp2 | 3246482 | 3246500 | -127.0 | gcgattgaggTGGCGCAGGAAACACATAAcgatcccgca | nd | [APIORCISFBSCS], [CV(GEA)], [GEA] | [2] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | ExuR | repressor | exuRp2 | 3246416 | 3246433 | -193.5 | gcagttctggCAGTGTTCGACCTGTTAGgtgcgctggt | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [2] |
proximal | ExuR | repressor | exuRp2 | 3246605 | 3246622 | -4.5 | taaactcgcaAAAGTGGTATAACAAATAtagtctgccg | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1], [2], [3] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | UxuR | repressor | exuRp2 | 3246416 | 3246433 | -193.5 | gcagttctggCAGTGTTCGACCTGTTAGgtgcgctggt | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [2] |
Note(s): |
1CRP is required for exuR transcription in a sugar-independent manner, irrespective of whether the bacteria are grown with glucose or glucuronate as the main carbon source Tutukina MN,2016, and this might be due to its cAMP-independent binding to a nonspecific site leading to only a secondary effect 8394684.3CRP is required for exuR transcription in a sugar-independent manner, irrespective of whether the bacteria are grown with glucose or glucuronate as the main carbon source Tutukina MN,2016, and this might be due to its cAMP-independent binding to a nonspecific site leading to only a secondary effect 8394684. |
Reference(s) |
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