RegulonDB RegulonDB 10.7: Operon Form
   

fadIJ operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: fadIJ
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: fadIJ
Gene(s): fadJ, fadI   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Campbell JW., et al., 2003
Promoter
Name: fadIp
+1: 2460511
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 42
Sequence: tagctcccactttcccttttctccacttggctaaatgtaaaaaaatggttaagactatgaTcaggtcagaccactttattt
                           -35                    -10       +1                   
Evidence: [AIPP]
Reference(s): [2] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal ArcA-Phosphorylated repressor fadIp 2460521 2460535 -17.0 ttggctaaatGTAAAAAAATGGTTAagactatgat nd [AIBSCS], [BPP], [GEA] [3]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal FadR repressor fadIp 2460496 2460512 8.0 taagactatgATCAGGTCAGACCACTTtatttatttt nd [APIORCISFBSCS], [BPP], [GEA] [1]


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
Evidence: [ICA] Inferred by computational analysis
Reference(s): [4] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -24.1 2460595 2460633 tcgggtacgtACGCCCCTGTCAGTTGCTGGCAGGGGCGTTTTCTTTTCtcttcttctt
  anti-terminator -13.5 2460624 2460665 tgattttccaGCTGGGTCTGCGTTAATTCCTCTCGGGTACGTACGCCCCTGtcagttgctg
  anti-anti-terminator -9.6 2460654 2460695 atttcactttTGCCTGCGAAGCTGAAATGCTGATTTTCCAGCTGGGTCTGCgttaattcct
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





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