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Name: | hyfABCDEFGHIJR-focB | |||||||||
Gene(s): | hyfA, hyfB, hyfC, hyfD, hyfE, hyfF, hyfG, hyfH, hyfI, hyfJ, hyfR, focB Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | This operon is apparently silent, because it was not expressed at a significant level in a wild-type strain under the tested conditions Andrews SC,1997. | |||||||||
Evidence: | [BTEI] Boundaries of transcription experimentally identified [IEP] Inferred from expression pattern [ITCR] Inferred through co-regulation |
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Reference(s): | [1] Andrews SC., et al., 1997 | |||||||||
Promoter | ||||||||||
Name: | hyfAp | |||||||||
+1: | 2601171 | |||||||||
Sigma Factor: | Sigma54 Sigmulon | |||||||||
Distance from start of the gene: | 30 | |||||||||
Sequence: |
cataacttattgaatatattgagttaatcagaatggcatcctttatgcaatatgaaatgcAatgtttcatatcattttcaa -24 -12 +1 |
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Evidence: |
[APIORCISFBSCS] [HIPP] [ICWHO] [TIM] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [3] Skibinski DA., et al., 2002 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | CRP-cyclic-AMP | activator | hyfAp | 2601000 | 2601022 | -160.5 | atacctcactTCTCGTGATCAAGATCACATTCTcgctttcccc | nd | [GEA], [AIBSCS], [APIORCISFBSCS] | [4], [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | FNR | repressor | hyfAp | 2601059 | 2601072 | -105.5 | aatccattttTTGCTGAACGTTAAtgaccatcat | nd | [GEA], [APIORCISFBSCS] | [4] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | FhlA-formate | activator | hyfAp | 2601034 | 2601047 | -130.0 | gctttcccctGCGACACGGGTGTCgaatccattt | nd | [GEA] | [3], [4] |
Reference(s) |
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