RegulonDB RegulonDB 10.8: Operon Form
   

artPIQM operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: artPIQM
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: artPIQM
Gene(s): artM, artQ, artI, artP   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [1] Wissenbach U., et al., 1993
[2] Wissenbach U., et al., 1995
Promoter
Name: artPp
+1: 903769
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 35
Sequence: ttttaacttttaaagcagaaatattgcataattattctgtcaaaggtactatcttcgaccTcaatagctatcagactgcca
                        -35                    -10          +1                   
Note(s): Inhibition of artPp by ArgR is mediated by steric exclusion of the RNA polymerase Caldara M,2007
Evidence: [HIPP]
[TIM]
Reference(s): [3] Caldara M., et al., 2007
[2] Wissenbach U., et al., 1995
Terminator(s)
Type: rho-dependent
Sequence: tgaaataaaaAAGACGGACAACTTAGTGGGTTGTCCGTCTTcattataaga
Reference(s): [2] Wissenbach U., et al., 1995
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal ArgR-L-arginine repressor artPp 903790 903808 -29.5 aaagcagaaaTATTGCATAATTATTCTGTcaaaggtact nd [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] [3], [4], [5]
proximal ArgR-L-arginine repressor artPp 903811 903829 -50.5 tgcgctttgcTTTTAACTTTTAAAGCAGAaatattgcat nd [BPP], [CV(SM)], [GEA], [SM] [3]


Transcription unit       
Name: artPIQM
Gene(s): artM, artQ, artI, artP   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [2] Wissenbach U., et al., 1995
Promoter
Name: artPp1
+1: 903815
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 81
Sequence: ccgcccccgttattttgtgctatgtttattgaataatgcgctttgcttttaacttttaaaGcagaaatattgcataattat
                             -35              -10           +1                   
Evidence: [TIM]
Reference(s): [6] Lacour S., et al., 2004
Terminator(s)
Type: rho-dependent
Sequence: tgaaataaaaAAGACGGACAACTTAGTGGGTTGTCCGTCTTcattataaga
Reference(s): [2] Wissenbach U., et al., 1995


Transcription unit       
Name: artPIQM
Gene(s): artM, artQ, artI, artP   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [2] Wissenbach U., et al., 1995
Promoter
Name: artPp2
+1: 903836
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 102
Sequence: gacatttatgctcgccgaccaccgcccccgttattttgtgctatgtttattgaataatgcGctttgcttttaacttttaaa
                           -35             -10              +1                   
Evidence: [TIM]
Reference(s): [6] Lacour S., et al., 2004
Terminator(s)
Type: rho-dependent
Sequence: tgaaataaaaAAGACGGACAACTTAGTGGGTTGTCCGTCTTcattataaga
Reference(s): [2] Wissenbach U., et al., 1995


Transcription unit       
Name: artPIQM
Gene(s): artM, artQ, artI, artP   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [2] Wissenbach U., et al., 1995
Promoter
Name: artPp3
+1: 903843
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 109
Sequence: gaatgccgacatttatgctcgccgaccaccgcccccgttattttgtgctatgtttattgaAtaatgcgctttgcttttaac
                          -35               -10             +1                   
Evidence: [TIM]
Reference(s): [6] Lacour S., et al., 2004
Terminator(s)
Type: rho-dependent
Sequence: tgaaataaaaAAGACGGACAACTTAGTGGGTTGTCCGTCTTcattataaga
Reference(s): [2] Wissenbach U., et al., 1995





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