Name: |
hycABCDEFGHI |
Synonym(s): |
OP00208 |
Gene(s): |
hycI, hycH, hycG, hycF, hycE, hycD, hycC, hycB, hycA
Genome Browser
M3D Gene expression
COLOMBOS
|
Note(s): |
Regulation of the hyc operon by ZraR (HydG) was suggested. However, this protein is not a physiological regulator of the operon Leonhartsberger S,2001 |
Evidence: |
[BTEI] Boundaries of transcription experimentally identified |
Reference(s): |
[1] Bohm R., et al., 1990 [2] Hopper S., et al., 1994 [3] Rossmann R., et al., 1995
|
Promoter |
|
Name: |
hycAp |
+1: |
2850461 |
Sigma Factor: |
Sigma54 Sigmulon |
Distance from start of the gene: |
26
|
Sequence: |
ttaaaaatctctttaataacaataaattaaaagttggcacaaaaaatgcttaaagctggcAtctctgttaaacgggtaacc -24 -12 +1
|
Evidence: |
[ICWHO] [RS-EPT-CBR] [TIM]
|
Reference(s): |
[4] Huerta AM., et al., 2003 [5] Lutz S., et al., 1990 [6] Salgado H, et al., 2012
|
Terminator(s) |
|
Type: |
rho-independent |
Sequence: |
aaccatgaagGCCCGATAAGCGCAGCGCATCGGGCaatttagcat |
Reference(s): |
[3] Rossmann R., et al., 1995
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
proximal |
FhlA-formate
|
activator |
hycAp |
2850539
|
2850552
|
-84.5
|
cgaaatgacaCGTCGACACGGCGAcgaaattcat |
nd
|
[GEA], [APIORCISFBSCS], [BPP]
|
[2], [8], [9]
|
remote |
FhlA-formate
|
activator |
hycAp |
2850553
|
2850566
|
-98.0
|
aatgtcgatgATGTCGAAATGACAcgtcgacacg |
nd
|
[GEA], [APIORCISFBSCS], [BPP]
|
[2], [8], [9], [10]
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
ModE-molybdate |
activator |
hycAp |
2850641
|
2850664
|
-192.0
|
cccgttggcaGAGGGTTATTTCGTGCATATCGCCtcccattaac
|
[GEA]
|
[7]
|
FhlA-formate |
activator |
hycAp |
2850553
|
2850566
|
-98.0
|
aatgtcgatgATGTCGAAATGACAcgtcgacacg
|
[GEA]
|
[2], [8], [9], [10]
|
FhlA-formate |
activator |
hycAp |
2850539
|
2850552
|
-84.5
|
cgaaatgacaCGTCGACACGGCGAcgaaattcat
|
[GEA]
|
[2], [8], [9]
|
NsrR |
repressor |
hycAp |
2850526
|
2850537
|
-70.0
|
acacggcgacGAAATTCATCTTtagcttaaaa
|
[GEA]
|
[11]
|
IHF |
activator |
hycAp |
2850493
|
2850505
|
-38.5
|
atctctttaaTAACAATAAATTAaaagttggca
|
[GEA]
|
[2]
|