RegulonDB RegulonDB 10.8: Operon Form
   

allS operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: allS
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: allS
Gene(s): allS   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [1] Rintoul MR., et al., 2002
Promoter
Name: allSp
+1: 532300
Distance from start of the gene: 79
Sequence: acatcaatacaaaagttggaatatttttccaaaactagatttagtccacaaattgaacagGgttatcatgtaaaaatactg
Evidence: [TIM]
Reference(s): [1] Rintoul MR., et al., 2002
TF binding sites (TFBSs)
[AllR,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal AllR-allantoin repressor allSp 532329 532345 -37.0 aatacaaaagTTGGAATATTTTTCCAAaactagattt nd [BCE], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] [1], [2]


Evidence    

 [TIM] Transcription initiation mapping

 [BCE] Binding of cellular extracts

 [BPP] Binding of purified proteins

 [CV(GEA)] cross validation(GEA)

 [CV(GEA/SM)] cross validation(GEA/SM)

 [CV(SM)] cross validation(SM)

 [GEA] Gene expression analysis

 [SM] Site mutation


Reference(s)    

 [1] Rintoul MR., Cusa E., Baldoma L., Badia J., Reitzer L., Aguilar J., 2002, Regulation of the Escherichia coli allantoin regulon: coordinated function of the repressor AllR and the activator AllS., J Mol Biol 324(4):599-610

 [2] Hasegawa A., Ogasawara H., Kori A., Teramoto J., Ishihama A., 2008, The transcription regulator AllR senses both allantoin and glyoxylate and controls a set of genes for degradation and reutilization of purines., Microbiology 154(Pt 11):3366-78

RegulonDB