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Name: | fhuF | |||||||||
Gene(s): | fhuF Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [AISGDTU] Automated inference that a single-gene directon is a transcription unit | |||||||||
Promoter | ||||||||||
Name: | fhuFp1 | |||||||||
+1: | 4605694 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 31 | |||||||||
Sequence: |
ttatcatttgcaagccagataaatcccttgctatcgggtaaacctatcgctatgattagcAatcattatcatttagattac -35 -10 +1 |
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Evidence: |
[HTTIM] [ICWHO] [IHBCE] [TIM] |
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Reference(s): |
[1] Huerta AM., et al., 2003 [2] Maciag A., et al., 2011 [3] Zheng M., et al., 2001 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | Fur-Fe2+ | repressor | fhuFp1 | 4605741 | 4605759 | -56.0 | atcatatgatAATTTTTATCATTTGCAAGccagataaat | nd | [GEA], [AIBSCS], [BPP] | [4], [5], [6], [7], [8] |
proximal | Fur-Fe2+ | repressor | fhuFp1 | 4605747 | 4605765 | -62.0 | accaatatcaTATGATAATTTTTATCATTtgcaagccag | nd | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP] | [4], [5], [6], [7], [8] |
proximal | Fur-Fe2+ | repressor | fhuFp1 | 4605764 | 4605782 | -79.0 | tttcattgatAATGATAACCAATATCATAtgataatttt | nd | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP] | [4], [5], [6], [7], [8] |
proximal | Fur-Fe2+ | repressor | fhuFp1 | 4605770 | 4605788 | -85.0 | catctctttcATTGATAATGATAACCAATatcatatgat | nd | [GEA], [AIBSCS], [BPP] | [4], [5], [6], [7], [8] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | OxyR | repressor | fhuFp1 | 4605685 | 4605701 | 2.0 | ctatcgctatGATTAGCAATCATTATCatttagatta | [GEA], [RSE], [APIORCISFBSCS], [BPP], [CEEUMA], [IHBCE] | [3], [9] | |
proximal | OxyR | repressor | fhuFp1 | 4605707 | 4605723 | -21.0 | aatcccttgcTATCGGGTAAACCTATCgctatgatta | [RSE], [CEEUMA], [IHBCE] | [3], [9] | |
proximal | OxyR | repressor | fhuFp1 | 4605769 | 4605785 | -83.0 | ctctttcattGATAATGATAACCAATAtcatatgata | [GEA], [APIORCISFBSCS], [BPP] | [3] | |
remote | OxyR | repressor | fhuFp1 | 4605791 | 4605807 | -105.0 | gtacgttgcaACATGATTTCATCTCTTtcattgataa | [GEA], [APIORCISFBSCS], [BPP] | [3] |
Name: | fhuF |
Gene(s): | fhuF Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [AISGDTU] Automated inference that a single-gene directon is a transcription unit |
Promoter | |
Name: | fhuFp2 |
+1: | 4605752 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 89 |
Sequence: |
ttgcaacatgatttcatctctttcattgataatgataaccaatatcatatgataatttttAtcatttgcaagccagataaa -35 -10 +1 |
Evidence: |
[HIPP] [ICWHO] [IHBCE] |
Reference(s): |
[1] Huerta AM., et al., 2003 [7] Vassinova N., et al., 2000 |
Reference(s) |
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