RegulonDB RegulonDB 10.8: Operon Form
   

borD operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: borD
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: borD
Gene(s): borD   Genome Browser M3D Gene expression COLOMBOS
Promoter
Name: borDp
+1: 578921
Distance from start of the gene: 28
Sequence: atatgaaatttcaactcattgtttagggtttgtttaattttctacacatacgattctgcgAacttcaaaaagcatcgggaa
Evidence: [TIM]
Reference(s): [1] Minagawa S., et al., 2003
TF binding sites (TFBSs)
[PhoP,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal PhoP-Phosphorylated activator borDp 578946 578962 -33.0 ttcaactcatTGTTTAGGGTTTGTTTAattttctaca nd [APIORCISFBSCS], [BPP] [1]


Evidence    

 [TIM] Transcription initiation mapping

 [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [BPP] Binding of purified proteins


Reference(s)    

 [1] Minagawa S., Ogasawara H., Kato A., Yamamoto K., Eguchi Y., Oshima T., Mori H., Ishihama A., Utsumi R., 2003, Identification and molecular characterization of the Mg2+ stimulon of Escherichia coli., J Bacteriol 185(13):3696-702

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