RegulonDB RegulonDB 10.8: Operon Form
   

ybjG operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ybjG
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ybjG
Gene(s): ybjG   Genome Browser M3D Gene expression COLOMBOS
Promoter
Name: ybjGp
+1: 883508
Distance from start of the gene: 120
Sequence: ttacgagtatagctacgctttctttaagttttatttaacctatgcccgttacaatcacccAccgtaaacaggccgcttgag
Evidence: [TIM]
Reference(s): [1] Eguchi Y., et al., 2004
TF binding sites (TFBSs)
[PhoP,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal PhoP-Phosphorylated activator ybjGp 883532 883548 -32.0 agctacgcttTCTTTAAGTTTTATTTAacctatgccc nd [APIORCISFBSCS], [CV(GEA)], [GEA] [1]


Evidence    

 [TIM] Transcription initiation mapping

 [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [CV(GEA)] cross validation(GEA)

 [GEA] Gene expression analysis


Reference(s)    

 [1] Eguchi Y., Okada T., Minagawa S., Oshima T., Mori H., Yamamoto K., Ishihama A., Utsumi R., 2004, Signal transduction cascade between EvgA/EvgS and PhoP/PhoQ two-component systems of Escherichia coli., J Bacteriol 186(10):3006-14

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