RegulonDB RegulonDB 10.8: Operon Form

dinQ operon and associated TUs in Escherichia coli K-12 genome

Name: dinQ
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: dinQ
Gene(s): dinQ   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
[LTED] Length of transcript experimentally determined
Reference(s): [1] Christmann M., et al., 2013
[2] Fernandez De Henestrosa AR., et al., 2000
[3] Weel-Sneve R., et al., 2013
Name: dinQp
+1: 3647982
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 194
Sequence: actgaaactattgcaaggacgtgctggttttataacctgcatgtactgtatgattatccaGttagctctgaggcattttca
                          -35                     -10       +1                   
Note(s): Five dinQ transcripts were identified by primer extension assay 22829598
Evidence: [CV(RS-EPT-CBR)]
Reference(s): [4] Salgado H, et al., 2012
[3] Weel-Sneve R., et al., 2013
Type: rho-independent
Reference(s): [3] Weel-Sneve R., et al., 2013
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal LexA repressor dinQp 3647980 3647999 -7.5 aacctgcatgTACTGTATGATTATCCAGTTagctctgagg nd [AIBSCS], [APIORCISFBSCS], [CV(GEA)], [GEA] [2], [3]
proximal LexA repressor dinQp 3648002 3648021 -29.5 tgcaaggacgTGCTGGTTTTATAACCTGCAtgtactgtat nd [APIORCISFBSCS] [3]

Regulation by sRNA    
  Small RNA name (Regulator) Regulation type Mechanism Function Binding Sites Evidence Reference
LeftPos RightPos Sequence (RNA-strand)
  agrA     repressor      
  agrB     repressor      
Notes: "The provided sequence is that of the RNA strand,i.e. 'U's are showed instead the 'T'"