Name: |
galP |
Gene(s): |
galP
Genome Browser
M3D Gene expression
COLOMBOS
|
Note(s): |
The regulation of the galP operon is unusual in that it is controlled by three repressors which are involved in two different areas of the metabolism El Qaidi S,2009 A potential RNA G-quadruplex structure, formed by guanine-rich sequences located in the coding sequence region of the gene, was identified for galP . This structure could regulate the expression of the gene, as observed for hemL gene expression Shao X, Zhang W, Umar MI, Wong HY, Seng Z, Xie Y, Zhang Y, Yang L, Kwok CK, Deng X,2020.
|
Promoter |
|
Name: |
galPp |
+1: |
3088255 |
Sigma Factor: |
Sigma70 Sigmulon |
Distance from start of the gene: |
29
|
Sequence: |
attacactgatgtgatttgcttcacatctttttacgtcgtactcacctatcttaattcacAataaaaaataaccatattgg -35 -10 +1
|
Evidence: |
[HIPP] [ICWHO] [NTAS] [RS-EPT-CBR] [TIM]
|
Reference(s): |
[1] Huerta AM., et al., 2003 [2] Salgado H, et al., 2012 [3] Semsey S., et al., 2007 [4] Weickert MJ., et al., 1993
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
remote |
GalR-D-galactose
|
repressor |
galPp |
3088004
|
3088019
|
-243.5
|
atcatcacaaCTGAAACCGATTACACcaaccacaac |
nd
|
[AIBSCS], [BPP], [SM]
|
[5]
|
remote |
GalR-D-galactose
|
repressor |
galPp |
3088040
|
3088055
|
-207.5
|
agacaaagatTTGTAATATTTTCATAttattattcg |
nd
|
[BPP]
|
[5]
|
remote |
GalR-D-galactose
|
repressor |
galPp |
3088069
|
3088084
|
-178.5
|
ttattcggttTTCACAGTTGTTACATttcttttcag |
nd
|
[AIBSCS], [BPP], [SM]
|
[5]
|
remote |
GalR-D-galactose
|
repressor |
galPp |
3088140
|
3088155
|
-107.5
|
tgatgatataACTCAATTATTTTCATgcacttaaat |
nd
|
[AIBSCS], [BPP], [SM]
|
[5]
|
proximal |
GalR
|
repressor |
galPp |
3088186
|
3088201
|
-61.5
|
ataaatgttaGTGTAAGCGATTACACtgatgtgatt |
nd
|
[GEA], [BPP], [SM]
|
[3], [5], [6]
|
remote |
GalR
|
repressor |
galPp |
3088383
|
3088398
|
136.5
|
cctggatatcGGTGTAATTGCTGGCGcactgccgtt |
nd
|
[GEA], [BPP], [SM]
|
[3], [5], [6]
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
remote |
GalS-D-galactose
|
repressor |
galPp |
3088004
|
3088019
|
-243.5
|
atcatcacaaCTGAAACCGATTACACcaaccacaac |
nd
|
[AIBSCS], [BPP], [SM]
|
[5]
|
remote |
GalS-D-galactose
|
repressor |
galPp |
3088040
|
3088055
|
-207.5
|
agacaaagatTTGTAATATTTTCATAttattattcg |
nd
|
[BPP]
|
[5]
|
remote |
GalS-D-galactose
|
repressor |
galPp |
3088069
|
3088084
|
-178.5
|
ttattcggttTTCACAGTTGTTACATttcttttcag |
nd
|
[AIBSCS], [BPP], [SM]
|
[5]
|
remote |
GalS-D-galactose
|
repressor |
galPp |
3088140
|
3088155
|
-107.5
|
tgatgatataACTCAATTATTTTCATgcacttaaat |
nd
|
[AIBSCS], [BPP], [SM]
|
[5]
|
proximal |
GalS
|
repressor |
galPp |
3088186
|
3088201
|
-61.5
|
ataaatgttaGTGTAAGCGATTACACtgatgtgatt |
nd
|
[GEA], [BPP], [SM]
|
[3], [5], [6]
|
remote |
GalS
|
repressor |
galPp |
3088383
|
3088398
|
136.5
|
cctggatatcGGTGTAATTGCTGGCGcactgccgtt |
nd
|
[GEA], [BPP], [SM]
|
[3], [5], [6]
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
proximal |
NagC
|
repressor |
galPp |
3088245
|
3088267
|
2.0
|
actcacctatCTTAATTCACAATAAAAAATAACcatattggag |
nd
|
[AIBSCS], [BPP], [SM]
|
[5]
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
GalR-D-galactose |
repressor |
galPp |
3088004
|
3088019
|
-243.5
|
atcatcacaaCTGAAACCGATTACACcaaccacaac
|
nd
|
[5]
|
GalS-D-galactose |
repressor |
galPp |
3088004
|
3088019
|
-243.5
|
atcatcacaaCTGAAACCGATTACACcaaccacaac
|
nd
|
[5]
|
GalR-D-galactose |
repressor |
galPp |
3088040
|
3088055
|
-207.5
|
agacaaagatTTGTAATATTTTCATAttattattcg
|
nd
|
[5]
|
GalS-D-galactose |
repressor |
galPp |
3088040
|
3088055
|
-207.5
|
agacaaagatTTGTAATATTTTCATAttattattcg
|
nd
|
[5]
|
GalR-D-galactose |
repressor |
galPp |
3088069
|
3088084
|
-178.5
|
ttattcggttTTCACAGTTGTTACATttcttttcag
|
nd
|
[5]
|
GalS-D-galactose |
repressor |
galPp |
3088069
|
3088084
|
-178.5
|
ttattcggttTTCACAGTTGTTACATttcttttcag
|
nd
|
[5]
|
GalR-D-galactose |
repressor |
galPp |
3088140
|
3088155
|
-107.5
|
tgatgatataACTCAATTATTTTCATgcacttaaat
|
nd
|
[5]
|
GalS-D-galactose |
repressor |
galPp |
3088140
|
3088155
|
-107.5
|
tgatgatataACTCAATTATTTTCATgcacttaaat
|
nd
|
[5]
|
GalS |
repressor |
galPp |
3088186
|
3088201
|
-61.5
|
ataaatgttaGTGTAAGCGATTACACtgatgtgatt
|
[GEA]
|
[3], [5], [6]
|
GalR |
repressor |
galPp |
3088186
|
3088201
|
-61.5
|
ataaatgttaGTGTAAGCGATTACACtgatgtgatt
|
[GEA]
|
[3], [5], [6]
|
CRP-cyclic-AMP |
activator |
galPp |
3088202
|
3088224
|
-42.5
|
gcgattacacTGATGTGATTTGCTTCACATCTTtttacgtcgt
|
[GEA]
|
[3], [4], [7]
|
NagC |
repressor |
galPp |
3088245
|
3088267
|
2.0
|
actcacctatCTTAATTCACAATAAAAAATAACcatattggag
|
nd
|
[5]
|
GalS |
repressor |
galPp |
3088383
|
3088398
|
136.5
|
cctggatatcGGTGTAATTGCTGGCGcactgccgtt
|
[GEA]
|
[3], [5], [6]
|
GalR |
repressor |
galPp |
3088383
|
3088398
|
136.5
|
cctggatatcGGTGTAATTGCTGGCGcactgccgtt
|
[GEA]
|
[3], [5], [6]
|