RegulonDB RegulonDB 10.7: Operon Form
   

prpR operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: prpR
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: prpR
Gene(s): prpR   Genome Browser M3D Gene expression COLOMBOS
Promoter
Name: prpRp
+1: 348471
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 28
Sequence: tttcaggcaatgtttcaccgcgtttcattgcaacaattatgaaacaagactaaacccaatAttcggtttcttaactttgcg
                        -35                   -10           +1                   
Note(s): We assigned a putative transcription start site to this promoter based on the observation that the majority of the σ70-dependent promoters, whose transcription start sites were determined experimentally, present a distance of 7 nucleotides between the transcription start site and the -10 box Hawley DK, McClure WR,1983
Evidence: [HIPP]
Reference(s): [1] Lee SK., et al., 2005
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal AscG repressor prpRp 348487 348493 -18.5 tgcaacaattATGAAACaagactaaac nd [AIBSCS], [BPP], [GEA] [2]
proximal AscG repressor prpRp 348498 348504 -29.5 ccgcgtttcaTTGCAACaattatgaaa nd [AIBSCS], [BPP], [GEA] [2]
proximal AscG repressor prpRp 348505 348511 -36.5 tgtttcaccgCGTTTCAttgcaacaat nd [AIBSCS], [BPP], [GEA] [2]
proximal AscG repressor prpRp 348515 348521 -46.5 tttcaggcaaTGTTTCAccgcgtttca nd [AIBSCS], [BPP], [GEA] [2]
proximal AscG repressor prpRp 348527 348533 -58.5 tttcagttaaCGTTTCAggcaatgttt nd [AIBSCS], [BPP], [GEA] [2]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP activator prpRp 348529 348551 -68.5 ctaatccgcaAATATGCGTTTCAGTTAACGTTTcaggcaatgt nd [APIORCISFBSCS], [BPP], [GEA], [SM] [1], [2]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal PhoB-Phosphorylated repressor prpRp 348486 348504 -24.0 ccgcgtttcaTTGCAACAATTATGAAACAagactaaacc nd [APIORCISFBSCS], [BPP], [GEA] [3]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal PrpR-(2S,3S)-2-methylcitrate repressor prpRp 348487 348510 -27.5 gtttcaccgcGTTTCATTGCAACAATTATGAAACaagactaaac nd [APIORCISFBSCS], [GEA] [1]
proximal PrpR-(2S,3S)-2-methylcitrate repressor prpRp 348521 348544 -61.5 gcaaatatgcGTTTCAGTTAACGTTTCAGGCAATgtttcaccgc nd [APIORCISFBSCS] [1]





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