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Name: | prpR | |||||||||
Gene(s): | prpR Genome Browser M3D Gene expression COLOMBOS | |||||||||
Promoter | ||||||||||
Name: | prpRp | |||||||||
+1: | 348471 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 28 | |||||||||
Sequence: |
tttcaggcaatgtttcaccgcgtttcattgcaacaattatgaaacaagactaaacccaatAttcggtttcttaactttgcg -35 -10 +1 |
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Note(s): | We assigned a putative transcription start site to this promoter based on the observation that the majority of the σ70-dependent promoters, whose transcription start sites were determined experimentally, present a distance of 7 nucleotides between the transcription start site and the -10 box Hawley DK, McClure WR,1983 | |||||||||
Evidence: |
[HIPP] [ICWHO] |
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Reference(s): |
[1] Huerta AM., et al., 2003 [2] Lee SK., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | AscG | repressor | prpRp | 348487 | 348493 | -18.5 | tgcaacaattATGAAACaagactaaac | nd | [GEA], [AIBSCS], [BPP] | [3] |
proximal | AscG | repressor | prpRp | 348498 | 348504 | -29.5 | ccgcgtttcaTTGCAACaattatgaaa | nd | [GEA], [AIBSCS], [BPP] | [3] |
proximal | AscG | repressor | prpRp | 348505 | 348511 | -36.5 | tgtttcaccgCGTTTCAttgcaacaat | nd | [GEA], [AIBSCS], [BPP] | [3] |
proximal | AscG | repressor | prpRp | 348515 | 348521 | -46.5 | tttcaggcaaTGTTTCAccgcgtttca | nd | [GEA], [AIBSCS], [BPP] | [3] |
proximal | AscG | repressor | prpRp | 348527 | 348533 | -58.5 | tttcagttaaCGTTTCAggcaatgttt | nd | [GEA], [AIBSCS], [BPP] | [3] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | activator | prpRp | 348529 | 348551 | -68.5 | ctaatccgcaAATATGCGTTTCAGTTAACGTTTcaggcaatgt | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [2], [3] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | PhoB-phosphorylated | repressor | prpRp | 348486 | 348504 | -24.0 | ccgcgtttcaTTGCAACAATTATGAAACAagactaaacc | nd | [GEA], [APIORCISFBSCS], [BPP] | [4] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | PrpR-(2S,3S)-2-methylcitrate | repressor | prpRp | 348487 | 348510 | -27.5 | gtttcaccgcGTTTCATTGCAACAATTATGAAACaagactaaac | nd | [GEA], [APIORCISFBSCS] | [2] |
proximal | PrpR-(2S,3S)-2-methylcitrate | repressor | prpRp | 348521 | 348544 | -61.5 | gcaaatatgcGTTTCAGTTAACGTTTCAGGCAATgtttcaccgc | nd | [APIORCISFBSCS] | nd |
Reference(s) |
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