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Name: | evgAS |
Gene(s): | evgA, evgS Genome Browser M3D Gene expression COLOMBOS |
Note(s): | The evgAS operon was inferred based on the facts that evgA and evgS are adjacent genes, encoded in the same direction, and their products are part of the two-component system EvgS/EvgA. EvgS is the sensor protein and EvgA is theresponse regulator 8125343. The expression of the gene evgA is increased under acidic growth conditions in either aerobiosis or microaerobiosis Marzan LW,2013 The increased expression under aerobiosis appears to be caused by the transcription factor PhoB Marzan LW,2013 but it is not known which promoter, of two transcribing evgA, is affected by PhoB. |
Evidence: | [IC] Inferred by curator |
Promoter | |
Name: | evgAp2 |
+1: | 2483631 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 124 |
Sequence: |
atcggtacaatccctgattttattgttgacatttcatttatgccgactatttatatggtaTacttgtcgaattatcttaaa -35 -10 +1 |
Evidence: | [TIM] |
Reference(s): | [1] Tanabe H., et al., 1998 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | EvgA-Phosphorylated | activator | evgAp2 | 2483513 | 2483530 | -109.5 | tgcaatacaaTTCTTACGCCTGTAGGATtagtaagaag | nd | [AIBSCS], [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1], [2], [3] |
Name: | evgAS |
Gene(s): | evgA, evgS Genome Browser M3D Gene expression COLOMBOS |
Note(s): | The evgAS operon was inferred based on the facts that evgA and evgS are adjacent genes, encoded in the same direction, and their products are part of the two-component system EvgS/EvgA. EvgS is the sensor protein and EvgA is theresponse regulator 8125343. The expression of the gene evgA is increased under acidic growth conditions in either aerobiosis or microaerobiosis Marzan LW,2013 The increased expression under aerobiosis appears to be caused by the transcription factor PhoB Marzan LW,2013 but it is not known which promoter, of two transcribing evgA, is affected by PhoB. |
Evidence: | [IC] Inferred by curator |
Promoter | |
Name: | evgAp1 |
+1: | 2483641 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 114 |
Sequence: |
tccctgattttattgttgacatttcatttatgccgactatttatatggtatacttgtcgaAttatcttaaaggaagctcag -35 -10 +1 |
Evidence: |
[CV(RS-EPT-CBR)] [CV(TIM)] [RS-EPT-CBR] [TIM] |
Reference(s): |
[5] Salgado H, et al., 2012 [1] Tanabe H., et al., 1998 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | EvgA-Phosphorylated | activator | evgAp1 | 2483513 | 2483530 | -119.5 | tgcaatacaaTTCTTACGCCTGTAGGATtagtaagaag | nd | [AIBSCS], [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1], [2], [3] |
Reference(s) |
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