Name: |
polB |
Synonym(s): |
dinA |
Gene(s): |
polB
Genome Browser
M3D Gene expression
COLOMBOS
|
Note(s): |
The polB gene could be belong to the araBAD operon, because it was observed that the RNAP reads through the terminator downstream of araD Stringer AM,2014 |
Promoter |
|
Name: |
polBp |
+1: |
65803 |
Sigma Factor: |
Sigma70 Sigmulon |
Distance from start of the gene: |
23
|
Sequence: |
gggcagtaatgactgtataaaaccacagccaatcaaacgaaaccaggctatactcaagccTggttttttgatggattttca -35 -10 +1
|
Note(s): |
We assigned a putative transcription start site to this promoter based on the observation that the majority of the promoters, whose transcription start sites were determined experimentally, present a distance of 6 nucleotides between the transcription start site and the -10 box. Lewis LK,1992predicted a potential polB promoter site (-35 and -10 regions) using three different computational search programs. |
Evidence: |
[AIPP] [ICWHO]
|
Reference(s): |
[1] Huerta AM., et al., 2003 [2] Lewis LK., et al., 1992
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
LexA |
repressor |
polBp |
65834
|
65853
|
-40.5
|
gggcagtaatGACTGTATAAAACCACAGCCaatcaaacga
|
[GEA]
|
[2]
|