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Name: | rutABCDEFG |
Gene(s): | rutG, rutF, rutE, rutD, rutC, rutB, rutA Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [PAGTSBP] Products of adjacent genes in the same biological process |
Reference(s): |
[1] Loh KD., et al., 2006 [2] Zimmer DP., et al., 2000 |
Promoter | |
Name: | rutAp |
+1: | 1074026 |
Sigma Factor: | Sigma54 Sigmulon |
Distance from start of the gene: | 15 |
Sequence: |
aacagattaataacattaactttttaaaaactggcatccgctttgcaaacaagccaatacGcggctgaaaaggatatgcag -24 -12 +1 |
Note(s): | This promoter was identified by microarray and ChIP assays with a mutant σ54 strain and a σ54-overexpressing strain, and by σ54-related promoter element identification Zhao K,2010 We assigned a putative transcription start site to this promoter based on the observation that the majority of the σ54-dependent promoters, whose transcription start sites were determined experimentally, present a distance of 11 nucleotides between the transcription start site and the -12 box Barrios H,1999. |
Evidence: |
[AIPP] [HIPP] [IEP] |
Reference(s): |
[3] Reitzer L., et al., 2001 [4] Zhao K., et al., 2010 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | ArcA-Phosphorylated1 | activator | rutAp | 1074116 | 1074130 | -97.0 | ctgttttgacCGTTTAGTCCACTTTttaccagata | nd | [AIBSCS], [CV(GEA)], [GEA] | [9] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | NtrC-Pasp | activator | rutAp | 1074142 | 1074158 | -124.0 | cgcgcacagaTGCATGTTTTATGTGCAactgttttga | nd | [AIBSCS], [CV(GEA)], [GEA] | [2] |
remote | NtrC-Pasp | activator | rutAp | 1074163 | 1074179 | -145.0 | ctcgaccttcTGCACTCTCATCGCGCAcagatgcatg | nd | [AIBSCS], [CV(GEA)], [GEA] | [2] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | PhoP-Phosphorylated | activator | rutAp | 1074125 | 1074140 | -106.0 | ttatgtgcaaCTGTTTTGACCGTTTAgtccactttt | nd | [AIBSCS], [CV(GEA)], [GEA] | [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | RutR1 | repressor | rutAp | 1074120 | 1074138 | -102.5 | atgtgcaactGTTTTGACCGTTTAGTCCActttttacca | nd | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [6], [7], [8] |
Note(s): |
1ArcA activates ycdG gene expression, although oxygen does not appear to regulate the gene Salmon KA,2005. 1The site of the RutR-regulating rutABCDEFG may hinder contact between NtrC and σ54 by stiffening the DNA between the enhancer and the promoter 17761674The site of the RutR-regulating rutABCDEFG may hinder contact between NtrC and σ54 by stiffening the DNA between the enhancer and the promoter 1776167 5ArcA activates ycdG gene expression, although oxygen does not appear to regulate the gene Salmon KA,2005. |
Reference(s) |
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