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Name: | qseBC | |||||||||
Gene(s): | qseB, qseC Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [ITCR] Inferred through co-regulation | |||||||||
Reference(s): |
[1] Clarke MB., et al., 2005 [2] Sperandio V., et al., 2002 |
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Promoter | ||||||||||
Name: | ygiWp6 | |||||||||
+1: | 3169749 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 79 | |||||||||
Sequence: |
accgtatttgctgccagtaaaccgtgttgtaacgcgctctgtacagcactaaattttattTttttcccttaagaagttgtt |
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Evidence: |
[ICWHO] [IDA] |
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Reference(s): |
[3] Huerta AM., et al., 2003 [4] Imashimizu M., et al., 2020 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | BasR-phosphorylated | activator | ygiWp6 | 3169726 | 3169745 | -13.5 | caagatagtcCTTAACAACTTCTTAAGGGAaaaaaataaa | nd | [GEA], [BPP] | [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | QseB-Phosphorylated | activator | ygiWp6 | 3169281 | 3169293 | -462.0 | ggagcggtaaCAATTACGGATTTactttgcgga | nd | [GEA], [BPP] | [1] |
proximal | QseB-Phosphorylated | activator | ygiWp6 | 3169748 | 3169760 | 6.0 | ttaagggaaaAAAATAAAATTTAgtgctgtaca | nd | [GEA], [BPP] | [1] |
Name: | qseBC |
Gene(s): | qseB, qseC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ITCR] Inferred through co-regulation |
Reference(s): |
[1] Clarke MB., et al., 2005 [2] Sperandio V., et al., 2002 |
Promoter | |
Name: | qseBp1 |
+1: | 3169801 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 27 |
Sequence: |
agggaaaaaaataaaatttagtgctgtacagagcgcgttacaacacggtttactggcagcAaatacggttatcgcagggat -35 -10 +1 |
Evidence: |
[ICWHO] [TIM] |
Reference(s): |
[1] Clarke MB., et al., 2005 [3] Huerta AM., et al., 2003 |
Reference(s) |
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