RegulonDB RegulonDB 10.10: Operon Form
   

qseBC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: qseBC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: qseBC
Gene(s): qseB, qseC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITCR] Inferred through co-regulation
Reference(s): [1] Clarke MB., et al., 2005
[2] Sperandio V., et al., 2002
Promoter
Name: ygiWp6
+1: 3169749
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 79
Sequence: accgtatttgctgccagtaaaccgtgttgtaacgcgctctgtacagcactaaattttattTttttcccttaagaagttgtt
Evidence: [ICWHO]
[IDA]
Reference(s): [3] Huerta AM., et al., 2003
[4] Imashimizu M., et al., 2020
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal BasR-phosphorylated activator ygiWp6 3169726 3169745 -13.5 caagatagtcCTTAACAACTTCTTAAGGGAaaaaaataaa nd [GEA], [BPP] [5]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote QseB-Phosphorylated activator ygiWp6 3169281 3169293 -462.0 ggagcggtaaCAATTACGGATTTactttgcgga nd [GEA], [BPP] [1]
proximal QseB-Phosphorylated activator ygiWp6 3169748 3169760 6.0 ttaagggaaaAAAATAAAATTTAgtgctgtaca nd [GEA], [BPP] [1]


Transcription unit       
Name: qseBC
Gene(s): qseB, qseC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITCR] Inferred through co-regulation
Reference(s): [1] Clarke MB., et al., 2005
[2] Sperandio V., et al., 2002
Promoter
Name: qseBp1
+1: 3169801
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 27
Sequence: agggaaaaaaataaaatttagtgctgtacagagcgcgttacaacacggtttactggcagcAaatacggttatcgcagggat
                        -35                        -10      +1                   
Evidence: [ICWHO]
[TIM]
Reference(s): [1] Clarke MB., et al., 2005
[3] Huerta AM., et al., 2003





RegulonDB