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Name: | yecR |
Gene(s): | yecR Genome Browser M3D Gene expression COLOMBOS |
Promoter | |
Name: | yecRp |
+1: | 1988200 |
Distance from start of the gene: | 22 |
Sequence: |
gcctgccaggcgtcttttccggccattgtcgcagcactgtaacgcgtaaaatagtgctttCtcttactcttctggctggac |
Note(s): | We assigned a putative transcriptional start site to this promoter based on the observation that the majority of the promoters, whose transcriptional start sites were determined experimentally, present a distance of 6 nucleotides between the transcriptional start site and the -10 box. |
Evidence: | [HIPP] |
Reference(s): | [1] Stafford GP., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | FlhDC | activator | yecRp | 1988124 | 1988140 | -68.0 | gacacctacaGATGGCAAGAAATAGCGcctgccaggc | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1] |
proximal | FlhDC | activator | yecRp | 1988151 | 1988167 | -41.0 | cctgccaggcGTCTTTTCCGGCCATTGtcgcagcact | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1] |
Note(s): | 1By making use of microarray analyses, Constantinidou et al. Constantinidou C,2006 concluded that FNR activates yecR gene expression. They also identified a putative FNR-binding site upstream of the gene, but the sequence was not shown.3By making use of microarray analyses, Constantinidou et al. Constantinidou C,2006 concluded that FNR activates yecR gene expression. They also identified a putative FNR-binding site upstream of the gene, but the sequence was not shown. |
Reference(s) |
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