RegulonDB RegulonDB 10.10: Operon Form
   

yecR operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yecR
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: yecR
Gene(s): yecR   Genome Browser M3D Gene expression COLOMBOS
Promoter
Name: yecRp
+1: 1988200
Distance from start of the gene: 22
Sequence: gcctgccaggcgtcttttccggccattgtcgcagcactgtaacgcgtaaaatagtgctttCtcttactcttctggctggac
Evidence: [HIPP]
Reference(s): [1] Stafford GP., et al., 2005
TF binding sites (TFBSs)
[FNR,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd FNR activator yecRp nd nd nd nd nd [GEA], [BPP] [2]
[FlhDC,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal FlhDC activator yecRp 1988124 1988140 -68.0 gacacctacaGATGGCAAGAAATAGCGcctgccaggc nd [GEA], [APIORCISFBSCS], [BPP] [1]
proximal FlhDC activator yecRp 1988151 1988167 -41.0 cctgccaggcGTCTTTTCCGGCCATTGtcgcagcact nd [GEA], [APIORCISFBSCS], [BPP] [1]


Evidence    

 [HIPP] Human inference of promoter position

 [GEA] Gene expression analysis

 [BPP] Binding of purified proteins

 [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.


Reference(s)    

 [1] Stafford GP., Ogi T., Hughes C., 2005, Binding and transcriptional activation of non-flagellar genes by the Escherichia coli flagellar master regulator FlhD2C2., Microbiology 151(Pt 6):1779-88

 [2] Constantinidou C., Hobman JL., Griffiths L., Patel MD., Penn CW., Cole JA., Overton TW., 2006, A reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coli K12 adapts from aerobic to anaerobic growth., J Biol Chem 281(8):4802-15

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