RegulonDB RegulonDB 10.8: Operon Form
   

rne operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: rne
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: rne
Gene(s): rne   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISDTU] Automated inference that a single-gene directon is a transcription unit
Promoter
Name: rnep4
+1: 1144421
Distance from start of the gene: 54
Sequence: cgataaccgtgaggttggcgacgcgactagacacgaggccatcggttcacacccggaaagGcgttactttgcccgcagctt
Evidence: [HTIM]
Reference(s): [1] Mendoza-Vargas A., et al., 2009


Transcription unit       
Name: rne
Gene(s): rne   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISDTU] Automated inference that a single-gene directon is a transcription unit
[LTED] Length of transcript experimentally determined
Reference(s): [2] Ow MC., et al., 2002
Promoter
Name: rnep1
+1: 1144728
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 361
Sequence: gggtgataaatggtaaaagtcatcttgctataacaaggcttgcagtggaataatgaggccGtttccgtgtccatccttgtt
                         -35                     -10        +1                   
Evidence: [HIPP]
[TIM]
Reference(s): [3] Claverie-Martin F., et al., 1991
[2] Ow MC., et al., 2002


Transcription unit       
Name: rne
Gene(s): rne   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISDTU] Automated inference that a single-gene directon is a transcription unit
[LTED] Length of transcript experimentally determined
Reference(s): [2] Ow MC., et al., 2002
Promoter
Name: rnep2
+1: 1144762
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 395
Sequence: tcaccagcaagaagtgaaaaaactgtgagtaagcgggtgataaatggtaaaagtcatcttGctataacaaggcttgcagtg
                         -35                    -10         +1                   
Evidence: [TIM]
Reference(s): [2] Ow MC., et al., 2002


Transcription unit       
Name: rne
Gene(s): rne   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISDTU] Automated inference that a single-gene directon is a transcription unit
[LTED] Length of transcript experimentally determined
Reference(s): [2] Ow MC., et al., 2002
Promoter
Name: rnep3
+1: 1144873
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 506
Sequence: cgattctaattagccaacaggattcgcgccactcatttttctatgcttatatttacttttGcaccttattacttcactgcg
                       -35                      -10         +1                   
Evidence: [TIM]
Reference(s): [2] Ow MC., et al., 2002





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