RegulonDB RegulonDB 10.8: Operon Form
   

ytfE operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ytfE
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ytfE
Gene(s): ytfE   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
[IC] Inferred by curator
Promoter
Name: ytfEp
+1: 4432009
Distance from start of the gene: 26
Sequence: aagcctctgctacgtaagggttatagcttttgccttaaagatgcatttaaaatacatcttAtcttattaagaatgaggtat
Evidence: [TIM]
Reference(s): [1] Bodenmiller DM., et al., 2006
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd FNR repressor ytfEp nd nd nd nd nd [GEA] [5]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal NarL-Phosphorylated activator ytfEp 4432042 4432057 -41.0 gcctctgctaCGTAAGGGTTATAGCTtttgccttaa nd [AIBSCS] [2]
proximal NarL-Phosphorylated activator ytfEp 4432051 4432066 -50.0 gttaaataagCCTCTGCTACGTAAGGgttatagctt nd [AIBSCS] [2]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal NarP-Phosphorylated activator ytfEp 4432042 4432057 -41.0 gcctctgctaCGTAAGGGTTATAGCTtttgccttaa nd [AIBSCS] [2]
proximal NarP-Phosphorylated activator ytfEp 4432051 4432066 -50.0 gttaaataagCCTCTGCTACGTAAGGgttatagctt nd [AIBSCS] [2]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal NsrR repressor ytfEp 4432012 4432030 -12.0 ttgccttaaaGATGCATTTAAAATACATCttatcttatt nd [AIBSCS], [APIORCISFBSCS], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] [1], [3], [4]





RegulonDB