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Name: | pgaABCD | ||||||||||
Gene(s): | pgaD, pgaC, pgaB, pgaA Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | The pgABCD operon was inferred based on the facts that its genes are adjacent, encoded in the same direction, and their products are all involved in biofilm formation Wang X, Preston JF, Romeo T,2004 H-NS represses pgaA transcription, although it is unknown if the effect is direct or indirect Parker A,2017 The Rho protein appears to negatively regulate expression of the operon pgaABCD during the log phase of growth Hafeezunnisa M, Sen R,2020. |
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Evidence: | [IC] Inferred by curator | ||||||||||
Promoter | |||||||||||
Name: | pgaAp | ||||||||||
+1: | 1092523 | ||||||||||
Distance from start of the gene: | 234 | ||||||||||
Sequence: |
ccgaaatcatgcatcggaatttactgatttaattattttaatcctaatttattttgaaaaAggcattgggatttatgccgt |
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Evidence: | [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] | ||||||||||
Reference(s): |
[1] Goller C., et al., 2006 [2] Wang X., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | NhaR-Na+ | activator | pgaAp | 1092556 | 1092572 | -41.0 | cgaaatcatgCATCGGAATTTACTGATttaattattt | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [3] |
proximal | NhaR-Na+ | activator | pgaAp | 1092578 | 1092594 | -63.0 | tcatcaggacTTTCGAAAAATCCGAAAtcatgcatcg | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [3] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | OmpR-phosphorylated | repressor | pgaAp | 1092545 | 1092564 | -31.5 | tgcatcggaaTTTACTGATTTAATTATTTTaatcctaatt | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [4] |
Reference(s) |
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