RegulonDB RegulonDB 10.8: Operon Form
   

yaiZ operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yaiZ
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: yaiZ
Gene(s): yaiZ   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISDTU] Automated inference that a single-gene directon is a transcription unit
Promoter
Name: yaiZp
+1: 399454
Distance from start of the gene: 139
Sequence: ctgacaggtcatttagattgtcaatatcagaatcatggtaaattgatgttgggaatattcCcgaagcgtgaatcttcgttg
Evidence: [HTIM]
Reference(s): [1] Raghavan R., et al., 2011


Regulation by sRNA    
  Small RNA name (Regulator) Regulation type Mechanism Function Binding Sites Evidence Reference
LeftPos RightPos Sequence (RNA-strand)
  oxyS antisense post-transcriptional regulation repressor      
Notes: "The provided sequence is that of the RNA strand,i.e. 'U's are showed instead the 'T'"


Evidence    

 [HTIM] High-throughput transcription initiation mapping


Reference(s)    

 [1] Raghavan R., Sage A., Ochman H., 2011, Genome-wide identification of transcription start sites yields a novel thermosensing RNA and new cyclic AMP receptor protein-regulated genes in Escherichia coli., J Bacteriol 193(11):2871-4

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