RegulonDB RegulonDB 10.9: Operon Form

ppa operon and associated TUs in Escherichia coli K-12 genome

Name: ppa
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: ppA
Gene(s): ppa   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISGDTU] Automated inference that a single-gene directon is a transcription unit
Name: ppap
+1: 4449686
Distance from start of the gene: 34
Sequence: aggaaaatgaagacgaaaacaagcgaagacattcggcgcgagttggctataatactcggcActtgtttgccacatattttt
Evidence: [HTTIM]    
Reference(s): [1] Mendoza-Vargas A., et al., 2009
[2] Salgado H, et al., 2012

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -6.3 4449679 4449711 aagacattcgGCGCGAGTTGGCTATAATACTCGGCACTTGTTtgccacatat
  anti-terminator -4.8 4449703 4449729 tgaagacgaaAACAAGCGAAGACATTCGGCGCGAGTtggctataat
  anti-anti-terminator -5.7 4449726 4449773 tttcctgctcTGTATACCGTCTTAAAACTGGTGAAAAAGGAAAATGAAGACGAAAACaagcgaagac
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"