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| Operon |  |
|---|---|
| Name: | tar-tap-cheRBYZ |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | tar-tap-cheRBYZ |
| Gene(s): | cheZ, cheY, cheB, cheR, tap, tar Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | A transcript that contains cheY is increased after σE induction, as observed in high-throughput analysis of gene expression Lacoux C,2020. The mRNA produced by the tar-tap-cheRBYZ operon has been observed mainly in the poles of the cell 31540875. |
| Evidence: | [PM] Polar mutation |
| Reference(s): |
[1] Arnosti DN., et al., 1989 [2] Kundu TK., et al., 1997 [3] Parkinson JS. 1978 [4] Parkinson JS., et al., 1982 [5] Slocum MK., et al., 1983 |
| Promoter | |
| Name: | tarp |
| +1: | 1972716 |
| Sigma Factor: | Sigma28 Sigmulon |
| Distance from start of the gene: | 25 |
| Sequence: |
caatttcgcggcgggtggcatcagcaataaagtttcccccctccttgccgataacgagatCaacttgttttcaggaaggtg -35 -10 +1 |
| Note(s): | Kundu et al. showed in 1997 that transcription of tar is highly dependent on alternative factor σF and can be transcribed by RNA polymerase σ28 in vitro Kundu TK,1997. |
| Evidence: |
[HIPP] [TIM] |
| Reference(s): |
[1] Arnosti DN., et al., 1989 [6] Helmann JD., et al., 1987 [7] Ide N., et al., 1999 [8] Ko M., et al., 2000 [2] Kundu TK., et al., 1997 [9] Liu X., et al., 1995 |
| Note(s): | 1By making use of microarray analyses, Constantinidou et al. Constantinidou C,2006 concluded that FNR activates tar-tap-cheRBYZ operon expression. They also identified a putative FNR-binding site upstream of the operon, but the sequence was not reported.1By making use of microarray analyses, Constantinidou et al. Constantinidou C,2006 concluded that FNR activates tar-tap-cheRBYZ operon expression. They also identified a putative FNR-binding site upstream of the operon, but the sequence was not reported. |
| Reference(s) |
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|---|---|
[HIPP] Human inference of promoter position