|
|
| Operon |  |
|---|---|
| Name: | omrA |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | omrA | |||||||||
| Synonym(s): | rygA | |||||||||
| Gene(s): | omrA Genome Browser M3D Gene expression COLOMBOS | |||||||||
| Note(s): | The RNA produced by the omrA gene has been observed mainly in the poles of the cell during stress conditions Kannaiah S, Livny J, Amster-Choder O,2019. |
|||||||||
| Evidence: | [ICWHO] Inferred computationally without human oversight [LTED] Length of transcript experimentally determined |
|||||||||
| Reference(s): | [1] Argaman L., et al., 2001 | |||||||||
| Promoter | ||||||||||
| Name: | omrAp | |||||||||
| +1: | 2976189 | |||||||||
| Distance from start of the gene: | 0 | |||||||||
| Sequence: |
ccttcattcctttgcgttttctcgctggcgaagagtcgtcgtgcagaccacaatcaagatCccagaggtattgattggtga |
|||||||||
| Evidence: | [TIM] | |||||||||
| Reference(s): | [1] Argaman L., et al., 2001 | |||||||||
| Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
|---|---|---|---|---|---|---|---|---|---|---|
| LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
| proximal | OmpR-phosphorylated | activator | omrAp | 2976250 | 2976269 | -70.5 | accgacaattTACACACCTCGTTGCATTTCccttcattcc | nd | [GEA], [APIORCISFBSCS] | [2] |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Transcriptional |
| Strand: | reverse |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -15.5 | 2976303 | 2976331 | gaattacaccAGCCTGCGCAGATGCGCAGGTTTTTTTTgccggtcatc | |
| anti-terminator | -6.89 | 2976319 | 2976363 | gataggtgaaGTCAACTTCGGGTTGAGCACATGAATTACACCAGCCTGCGCAGAtgcgcaggtt | |
| anti-anti-terminator | -11.54 | 2976345 | 2976400 | ggcttcaggtTGCTAAAGTGGTGATCCCAGAGGTATTGATAGGTGAAGTCAACTTCGGGTTGAGCacatgaatta |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
| Reference(s) |
|
|---|---|
[TIM] Transcription initiation mapping