Name: |
ompW |
Gene(s): |
ompW
Genome Browser
M3D Gene expression
COLOMBOS
|
Note(s): |
The ompW gene is regulated by temperature at the transcriptional regulation level, and it is positively controlled by both H-NS and StpA transcriptional regulation, which were identified by single (hns or & stpA) and double (hns-stpA) mutants Brambilla L, Morán-Barrio J, Viale AM,2014 ompW expression is reduced under iron limitation Zhang P,2019. The ompW gene is upregulated by long-term (8 to 12 h) exposure of E. coli to some biocides Merchel Piovesan Pereira B, Wang X, Tagkopoulos I,2020. |
Evidence: |
[AISGDTU] Automated inference that a single-gene directon is a transcription unit |
Promoter |
|
Name: |
ompWp |
+1: |
1313991 |
Distance from start of the gene: |
29
|
Sequence: |
tcatatgtaatgtgatctatgtaggatcatttgttactccaatgtaggtatattcgtcacGtttttataaccataacgacg
|
Evidence: |
[HTTIM]  [RS-EPT-CBR] [TIM]
|
Reference(s): |
[1] Mendoza-Vargas A., et al., 2009 [2] Salgado H, et al., 2012 [3] Xiao M., et al., 2016
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
remote |
FNR
|
repressor |
ompWp |
1313858
|
1313871
|
-126.5
|
tatttaaaaaTTGATTTAAATCACattaaccagg |
nd
|
[GEA], [AIBSCS], [BPP]
|
[3]
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
FNR |
repressor |
ompWp |
1313858
|
1313871
|
-126.5
|
tatttaaaaaTTGATTTAAATCACattaaccagg
|
[GEA]
|
[3]
|
FNR |
activator |
ompWp |
1313903
|
1313916
|
-81.5
|
aacttctaaaTTAATCCAGATCAAtaaagggtga
|
[GEA]
|
[3], [7]
|
CRP-cyclic-AMP |
repressor |
ompWp |
1313941
|
1313957
|
-42.5
|
tcatatgtaaTGTGATCTATGTAGGATcatttgttac
|
[GEA]
|
[3]
|
NarL-phosphorylated |
repressor |
ompWp |
1313965
|
1313981
|
-18.5
|
gatcatttgtTACTCCAATGTAGGTATattcgtcacg
|
[GEA]
|
[3]
|
ArcA-phosphorylated |
repressor |
ompWp |
1313983
|
1314001
|
1.5
|
tgtaggtataTTCGTCACGTTTTTATAACcataacgacg
|
[GEA]
|
[3]
|
Fur-Fe2+ |
activator |
ompWp |
nd
|
nd
|
nd
|
nd
|
[GEA]
|
[8]
|
SoxS |
repressor |
ompWp |
nd
|
nd
|
nd
|
nd
|
[GEA]
|
[8]
|
sRNA |
TU Regulated |
Function |
Binding Sites |
Regulatory Mechanism |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
PosLeft |
PosRight |
Target sequence (mRNA) |
small regulatory RNA RybB
|
ompW
|
repressor
|
1314007
|
1314039
|
CGACGGAGCGGAUAUGAAAAAGUUAACAGUGGC
|
nd
|
[AH], [IEP], [IPI]
|
[4], [5]
|
small regulatory RNA MicA
|
ompW
|
repressor
|
1314013
|
1314045
|
AGCGGAUAUGAAAAAGUUAACAGUGGCGGCUUU
|
nd
|
[IEP]
|
[6]
|