RegulonDB RegulonDB 10.6.3: Operon Form
   

yhiM operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yhiM
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: yhiM
Gene(s): yhiM   Genome Browser M3D Gene expression COLOMBOS
Note(s): Microarray analyses have shown that the yhiM gene is activated by the transcriptional regulator GadX, but it is not known if the effect of the regulator on the operon is direct or indirect. The positive regulation of the yhiM gene by GadX is positively influenced by the transcriptional regulator GadW |CITS:[12730179]| .
Evidence: [AISGDTU] Automated inference that a single-gene directon is a transcription unit
Promoter
Name: yhiMp
+1: 3634743
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 98
Sequence: tggccttttgaacgctgaaaagtagcgctctgcaaagtaaaccccgctatagttatgctaTgcatttgtctttaatgatat
                       -35                 -10              +1                   
Evidence: [AIPP]
Reference(s): [1] Gama-Castro S., et al., 2008
[2] Seo SW., et al., 2015
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd GadE-RcsB activator yhiMp nd nd nd nd nd [BPP] [3]
proximal GadE activator yhiMp 3634655 3634674 -78.5 gcataagaatTAATCTTAGGATAAATTTTTatttatcatg nd , [IHBCE], [2]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd H-NS repressor yhiMp nd nd nd nd nd [BPP] [3]


Regulation by sRNA    
  Small RNA name (Regulator) Regulation type Mechanism Function Binding Sites Evidence Reference
LeftPos RightPos Sequence (RNA-strand)
  oxyS antisense post-transcriptional regulation repressor       [GEA]
[IMP]
[IPI]
[4]
Notes: "The provided sequence is that of the RNA strand,i.e. 'U's are showed instead the 'T'"





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