RegulonDB RegulonDB 10.10: Operon Form

agaS-kbaY-agaBCDI operon and associated TUs in Escherichia coli K-12 genome

Name: agaS-kbaY-agaBCDI
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: agaSYBCDI
Synonym(s): agaSkbaYagaBCDI
Gene(s): agaS, kbaY, agaB, agaC, agaD, agaI   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITCR] Inferred through co-regulation
Reference(s): [1] Brinkkotter A., et al., 2000
Name: agaSp
+1: 3281889
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 87
Sequence: tcgttttatttcttttttctccattgaactttcagtttcttttctatagattttaatcaaCgaaagacatcaccaagtgaa
                        -35                  -10            +1                   
Evidence: [HIPP]
Reference(s): [2] Huerta AM., et al., 2003
[3] Ray WK., et al., 2004
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote AgaR repressor agaSp 3281605 3281624 -274.5 ctggattcagGGTCAATTAGCTTCGTTTTGatagtttgct nd [GEA], [APIORCISFBSCS], [BPP] [3]
remote AgaR repressor agaSp 3281668 3281687 -211.5 ccgtaaggccTTTCTTTTTCTTTCGTTTTGatctgtgcag nd [GEA], [APIORCISFBSCS], [BPP] [3]
remote AgaR repressor agaSp 3281785 3281804 -94.5 gcatccagcaATCCCTTTTGCTTCCTTTATcttttctttc nd [GEA], [APIORCISFBSCS], [BPP] [3]
proximal AgaR repressor agaSp 3281827 3281846 -52.5 cgatcacaaaTTTCGTTTTATTTCTTTTTTctccattgaa nd [GEA], [APIORCISFBSCS], [BPP] [3]
proximal AgaR repressor agaSp 3281858 3281877 -21.5 tccattgaacTTTCAGTTTCTTTTCTATAGattttaatca nd [GEA], [APIORCISFBSCS], [BPP] [3]
proximal AgaR repressor agaSp 3281901 3281920 22.5 aaagacatcaCCAAGTGAAATGAAACGAAAggcaagtgaa nd [GEA], [APIORCISFBSCS], [BPP] [3]