RegulonDB RegulonDB 11.2: Operon Form
   

yidQ operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yidQ
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: yidQ
Synonym(s): GN03948; ecfI;
Gene(s): yidQ   Genome Browser M3D Gene expression COLOMBOS
Promoter
Name: yidQp
+1: 3867544
Sigma Factor: Sigma24 Sigmulon
Distance from start of the gene: 184
Sequence: ccagaacacccatcaggcgcgtcctcatcggctacgatgtaaaaatgggtctggaaatgaActtttcaagccttatcagcg
                                -35                     -10 +1                   
Evidence: [COMP-AINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[COMP-HINF-SIMILAR-TO-CONSENSUS]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
Reference(s): [1] Dartigalongue C., et al., 2001
[2] Huerta AM., et al., 2003
TF binding sites (TFBSs)
[CpxR,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote CpxR-phosphorylated activator yidQp 3867282 3867299 -254.0 tagcaatgcgGTAATGGTTTTCGTCTACcagttcaacg nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [1]
remote CpxR-phosphorylated activator yidQp 3867360 3867377 -176.0 tttctaagtgGTTAAACAAACGGTCAAAtccaatagca nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [1]
remote CpxR-phosphorylated activator yidQp 3867393 3867409 -143.5 tagcagaacgGTAAAGCGGGGATAAATcaaagttacg nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [1]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [COMP-HINF-POSITIONAL-IDENTIFICATION] Human inference of promoter position

 [COMP-HINF-SIMILAR-TO-CONSENSUS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping

 [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis


Reference(s)    

 [1] Dartigalongue C., Missiakas D., Raina S., 2001, Characterization of the Escherichia coli sigma E regulon., J Biol Chem 276(24):20866-75

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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