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Name: | eno |
Gene(s): | eno Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [1] Shimada T., et al., 2005 |
Promoter | |
Name: | enop4 |
+1: | 2907968 |
Sigma Factor: | Sigma70, Sigma38 |
Distance from start of the gene: | 27 |
Sequence: |
gtaaaaaagttagagcggcaacgcgtaccctgggtacgcgttgtttgtctggagtttcagTttaactagtgacttgaggaa -10 +1 |
Evidence: |
[CV(RS-EPT-CBR)] [HTIM] [RS-EPT-CBR] |
Reference(s): |
[2] Olvera L., et al., 2009 [3] Salgado H, et al., 2012 |
Name: | eno |
Gene(s): | eno Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [IC] Inferred by curator |
Reference(s): | [1] Shimada T., et al., 2005 |
Promoter | |
Name: | enop6 |
+1: | 2908018 |
Distance from start of the gene: | 77 |
Sequence: |
caggctttgtgaaagccgccagcgagttccagaaacgtcaggcgaagtaagtaaaaaagtTagagcggcaacgcgtaccct |
Evidence: | [HTIM] |
Reference(s): |
[4] Mendoza-Vargas A., et al., 2009 [2] Olvera L., et al., 2009 |
Name: | eno |
Gene(s): | eno Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [1] Shimada T., et al., 2005 |
Promoter | |
Name: | enop7 |
+1: | 2908152 |
Sigma Factor: | Sigma70, Sigma38 |
Distance from start of the gene: | 211 |
Sequence: |
tctgcgcgttgcgggccgttccggggatgatcagttggtcgagatcatcgaagttccgaaTcacccgtggttcgtggcttg -10 +1 |
Evidence: | [HTIM] |
Reference(s): | [2] Olvera L., et al., 2009 |
Name: | eno |
Gene(s): | eno Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [1] Shimada T., et al., 2005 |
Promoter | |
Name: | enop1 |
+1: | 2908674 |
Distance from start of the gene: | 733 |
Sequence: |
actgaaacacggtgggctgaagaatcgtgtcagcgtcaacatcaaactgatcgattcacaAgatgttgaaacgcgcggcgt |
Evidence: | [TIM] |
Reference(s): | [1] Shimada T., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | Cra | repressor | enop1 | 2908674 | 2908691 | -8.5 | cgtcaacatcAAACTGATCGATTCACAAgatgttgaaa | nd | [BPP], [GEA] | [1] |
remote | Cra | repressor | enop1 | 2908871 | 2908888 | -205.5 | gacgattataTTTGTAAACGATTCAGCTtaaactgccc | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1] |
Name: | eno |
Gene(s): | eno Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [1] Shimada T., et al., 2005 |
Promoter | |
Name: | enop2 |
+1: | 2908702 |
Distance from start of the gene: | 761 |
Sequence: |
cggatgcttataaatcagtgatcgaagcactgaaacacggtgggctgaagaatcgtgtcaGcgtcaacatcaaactgatcg |
Evidence: | [TIM] |
Reference(s): | [1] Shimada T., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | Cra | repressor | enop2 | 2908674 | 2908691 | 20.5 | cgtcaacatcAAACTGATCGATTCACAAgatgttgaaa | nd | [BPP], [GEA] | [1] |
remote | Cra | repressor | enop2 | 2908871 | 2908888 | -177.5 | gacgattataTTTGTAAACGATTCAGCTtaaactgccc | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1] |
Name: | eno |
Gene(s): | eno Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [1] Shimada T., et al., 2005 |
Promoter | |
Name: | enop3 |
+1: | 2908846 |
Distance from start of the gene: | 905 |
Sequence: |
aggggctggacgattatatttgtaaacgattcagcttaaactgcccggaagcgaatctgtCcgaatgggaacaggttatct |
Evidence: | [TIM] |
Reference(s): | [1] Shimada T., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | Cra | repressor | enop3 | 2908674 | 2908691 | 164.5 | cgtcaacatcAAACTGATCGATTCACAAgatgttgaaa | nd | [BPP], [GEA] | [1] |
proximal | Cra | repressor | enop3 | 2908871 | 2908888 | -33.5 | gacgattataTTTGTAAACGATTCAGCTtaaactgccc | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1] |
Name: | pyrG-eno |
Gene(s): | eno, pyrG Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ICWHO] Inferred computationally without human oversight |
Promoter | |
Name: | pyrGp |
+1: | 2909713 |
Distance from start of the gene: | 47 |
Sequence: |
cgaagaggagggataatgaaagtttgtggcacaggtcatgttcgggtatactgctttcccGtcttggttattccatcgtct |
Evidence: | [HTIM] |
Reference(s): | [4] Mendoza-Vargas A., et al., 2009 |
Name: | pyrG-eno |
Gene(s): | eno, pyrG Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ICWHO] Inferred computationally without human oversight |
Promoter | |
Name: | pyrGp2 |
+1: | 2909717 |
Distance from start of the gene: | 51 |
Sequence: |
ctggcgaagaggagggataatgaaagtttgtggcacaggtcatgttcgggtatactgcttTcccgtcttggttattccatc |
Evidence: | [TIM] |
Reference(s): | [5] Weng M., et al., 1986 |
Name: | pyrG-eno |
Gene(s): | eno, pyrG Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ICWHO] Inferred computationally without human oversight |
Promoter | |
Name: | pyrGp1 |
+1: | 2909797 |
Distance from start of the gene: | 131 |
Sequence: |
ttaaatgacaagcgcttgatttgcgtcaaaaacatttaccccaaaggggctattttctcaCtcctgatttcaatagtgcgc |
Evidence: | [TIM] |
Reference(s): | [5] Weng M., et al., 1986 |
RNA cis-regulatory element | ![]() |
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Regulation, transcriptional elongation | |
Attenuator type: | Transcriptional |
Strand: | reverse |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
---|---|---|---|---|---|
terminator | -11.5 | 2907983 | 2908007 | agagcggcaaCGCGTACCCTGGGTACGCGTTGTTtgtctggagt | |
anti-terminator | -8.99 | 2907996 | 2908041 | tccagaaacgTCAGGCGAAGTAAGTAAAAAAGTTAGAGCGGCAACGCGTACCCTGggtacgcgtt | |
anti-anti-terminator | -8.2 | 2908010 | 2908064 | ctttgtgaaaGCCGCCAGCGAGTTCCAGAAACGTCAGGCGAAGTAAGTAAAAAAGTTAGAGCGGcaacgcgtac |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Reference(s) |
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