RegulonDB RegulonDB 10.7: Operon Form

dicC-ydfXW operon and associated TUs in Escherichia coli K-12 genome

Name: dicC-ydfXW
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Gene(s): ydfW, ydfX, dicC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Name: dicCp
+1: 1647876
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 26
Sequence: catagttagctaatgctaaatcgtattgactatgtttttgttaacatctatcttgttagtTatgactaacaataaaggtgt
                          -35                    -10        +1                   
Evidence: [HIPP]
Reference(s): [1] Yun SH., et al., 2012
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal DicA repressor dicCp 1647865 1647885 2.5 taacatctatCTTGTTAGTTATGACTAACAAtaaaggtgtt nd [BPP], [GEA], [IHBCE] [1]

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: reverse
Evidence: [ICA] Inferred by computational analysis
Reference(s): [2] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -12.9 1647855 1647894 tgtttttgttAACATCTATCTTGTTAGTTATGACTAACAATAAAGGTGTtttaaatgct
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"