RegulonDB RegulonDB 10.7: Operon Form
   

yacC-speED operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yacC-speED
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: speD
Gene(s): speD   Genome Browser M3D Gene expression COLOMBOS
Evidence: [IEP] Inferred from expression pattern
Reference(s): [1] Li Z., et al., 2019
Promoter
Name: speDp
+1: 135717
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 135
Sequence: atcatgacttttgcatgggcgacagataacgacgccttacgccatctctcaaccgaaattAttcaggcgcgttttctcgcc
                       -35                       -10        +1                   
Evidence: [RE]
[TIM]
Reference(s): [1] Li Z., et al., 2019
Terminator(s)
Type: rho-independent
Sequence: agtaaataaaTCTGGCGGAGCCTGGGAGCTCCGCCAGAgccgttaaac
Reference(s): [2] Xie QW., et al., 1989


Transcription unit       
Name: speE
Gene(s): speE   Genome Browser M3D Gene expression COLOMBOS
Evidence: [IEP] Inferred from expression pattern
Reference(s): [1] Li Z., et al., 2019
Promoter
Name: speEp
+1: 136504
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 40
Sequence: gatacctttttgtagaaatattgaccgtgcatccgcggtcaatgttagctattatgttgcGccctttttttacgggtgtta
                     -35                          -10       +1                   
Evidence: [RE]
[TIM]
Reference(s): [1] Li Z., et al., 2019


Transcription unit       
Name: yacC-speED
Gene(s): speD, speE, yacC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [2] Xie QW., et al., 1989
[3] Xie QW., et al., 1993
Promoter
Name: yacCp
+1: 136940
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 23
Sequence: gacacaatttaatcgacaataatggtcgtcgcctcgctcgcagtgtgctaacgtttatctTctttaagcccctggtagaag
                      -35                        -10        +1                   
Evidence: [HIPP]
[RS-EPT-CBR]
[TIM]
Reference(s): [4] Salgado H, et al., 2012
[2] Xie QW., et al., 1989
Terminator(s)
Type: rho-independent
Sequence: agtaaataaaTCTGGCGGAGCCTGGGAGCTCCGCCAGAgccgttaaac
Reference(s): [2] Xie QW., et al., 1989





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