RegulonDB RegulonDB 10.10: Operon Form

yiiS-uspD operon and associated TUs in Escherichia coli K-12 genome

Name: yiiS-uspD
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: yiiS-uspD
Gene(s): yiiS, uspD   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Name: yiiSp
+1: 4112869
Sigma Factor: Sigma24 Sigmulon
Distance from start of the gene: 98
Sequence: gcaaatgacaatacccggaaaatccttctgaactcttcaccttaagcaatatcaaaaaaaAtggtaatccataagatcatt
                              -35                   -10     +1                   
Evidence: [AIBSCS]
Reference(s): [1] Huerta AM., et al., 2003
[2] Rezuchova B., et al., 2003
[3] Rhodius VA., et al., 2005
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal YdeO activator yiiSp 4112798 4112831 -55.0 cgggattgttATTTCCACGATGCAAATGACAATACCCGGAAAATccttctgaac nd [GEA], [BPP], [IHBCE] [4]
Allosteric regulation of RNA-polymerase
  Regulator Function Promoter target of RNApol Growth Conditions Note Evidence Reference
  ppGpp activation yiiSp nd   [IEP] [5]
Evidence: [IEP] Inferred from expression pattern
Reference(s): [5] Gustavsson N., et al., 2002