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|
| Operon |  |
|---|---|
| Name: | ecnAB |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | ecnB |
| Gene(s): | ecnB Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified [LTED] Length of transcript experimentally determined |
| Reference(s): | [1] Bishop RE., et al., 1998 |
| Promoter | |
| Name: | ecnBp |
| +1: | 4376509 |
| Sigma Factor: | Sigma38 Sigmulon |
| Distance from start of the gene: | 44 |
| Sequence: |
ttctcttccgaaaaatcatcagattcccatcatttttggcgatgttgtctattattaattTgctataggcaaacataaata -35 -10 +1 |
| Evidence: | [TIM] |
| Reference(s): | [1] Bishop RE., et al., 1998 |
| Terminator(s) | |
| Type: | rho-independent |
| Sequence: | aataagcaatAACGGTACGACAGCTGTGTCGTGCCGTttgttttttc |
| Reference(s): | [1] Bishop RE., et al., 1998 |
| Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
|---|---|---|---|---|---|---|---|---|---|---|
| LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
| proximal | OmpR-P | repressor | ecnBp | 4376517 | 4376536 | 18.5 | tttgctatagGCAAACATAAATAACATTACctaaaaggaa | nd | [APIORCISFBSCS] | [1] |
| Gene(s): | ecnA, ecnB Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [ICWHO] Inferred computationally without human oversight |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Translational |
| Strand: | forward |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -21.3 | 4376270 | 4376301 | agtaatgcggTTGTGGTGCGGCCTGCAGGCTGCACCATCACttattcaggt |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
[TIM] Transcription initiation mapping