RegulonDB RegulonDB 11.2: Operon Form

nepI operon and associated TUs in Escherichia coli K-12 genome

Name: nepI
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: nepI
Gene(s): nepI   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
[EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified
Reference(s): [1] Gronskiy SV., et al., 2005
Name: nepIp
+1: 3841771
Distance from start of the gene: 32
Sequence: acaccgtaaaagttgcaaaaacgttaaatgcgtcacacatttcaatgttaaagtggtcggCttttcccctgaaacatgcca
Reference(s): [1] Gronskiy SV., et al., 2005
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal SoxS activator nepIp 3841756 3841775 6.0 gttaaagtggTCGGCTTTTCCCCTGAAACAtgccacgggt nd [EXP-IEP-RNA-SEQ], [COMP-HINF], [EXP-CHIP-EXO-MANUAL] S [2]