RegulonDB RegulonDB 10.6.3: Operon Form
   

dgoRKADT operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: dgoRKADT
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Gene(s): dgoT, dgoD, dgoA, dgoK, dgoR   Genome Browser M3D Gene expression COLOMBOS
Note(s): Based on a combination of genetic, functional, and biochemical analyses, regulatory elements were identified in the regulatory region of the dgoRKADT operon |CITS:[29728462]|.
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: dgoRp
+1: 3875185
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 25
Sequence: tcatcacgctggtactacaaagttgccgcgttatgcatcgatcggggtaaagtagagaagAacatacagagcacaaggact
Evidence: [AIPP]
[IDA]
Reference(s): [1] Belliveau NM., et al., 2018
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote CRP-cAMP activator dgoRp 3875293 3875312 -117.0 attgttctttTTGTGATCTAAATTGTAGTAcaacaatata nd [AIBSCS], [BPP], [GEA], [SM] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal DgoR repressor dgoRp 3875268 3875280 -88.5 acaatataagTTTGTACTACATTacacgcacgg nd [AIBSCS], , [BPP], [GEA], [SM] [1], [2]
remote DgoR repressor dgoRp 3875290 3875301 -110.0 tgtgatctaaATTGTAGTACAAcaatataagt nd [AIBSCS], , [BPP], [GEA], [SM] [1], [2]


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: reverse
Evidence: [ICA] Inferred by computational analysis
Reference(s): [3] null null
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -17.64 3871728 3871776 aattacagggCATGGTGAGCGGCTTCGCTATGCCCAAAATCTGGAGAAAGCTCGCTATggatattccc
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





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