Name: |
xylE |
Gene(s): |
xylE
Genome Browser
M3D Gene expression
COLOMBOS
|
Note(s): |
Based on a combination of genetic, functional, and biochemical analyses, regulatory elements were identified in the regulatory region of xylE Belliveau NM,2018 |
Evidence: |
[ICWHO] Inferred computationally without human oversight |
Promoter |
|
Name: |
xylEp |
+1: |
4242291 |
Sigma Factor: |
Sigma70 Sigmulon |
Distance from start of the gene: |
37
|
Sequence: |
gtaaacgcattgtaaaaaatgataattgccttaactgcctgacaattccaacatcaatgcActgataaaagatcagaatgg
|
Evidence: |
[AIBSPD] [IC] [ICWHO] [IMP]
|
Reference(s): |
[1] Belliveau NM., et al., 2018
|
Terminator(s) |
|
Type: |
rho-independent |
Sequence: |
aagcgggagtAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGattacagcgt |
Reference(s): |
[2] Davis EO., et al., 1987
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
CRP-cyclic-AMP |
activator |
xylEp |
4242364
|
4242379
|
-80.0
|
gataattatcACAATTAAGATCACAGaaaagacatt
|
[GEA]
|
[1]
|
XylR-α-D-xylopyranose |
activator |
xylEp |
4242348
|
4242364
|
-65.0
|
taagatcacaGAAAAGACATTACGTAAacgcattgta
|
[GEA]
|
[1]
|
XylR-α-D-xylopyranose |
activator |
xylEp |
4242327
|
4242343
|
-44.0
|
acgtaaacgcATTGTAAAAAATGATAAttgccttaac
|
[GEA]
|
[1]
|