RegulonDB RegulonDB 10.9: Operon Form
   

sfsB operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: sfsB
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: sfsB
Gene(s): sfsB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: sfsBp
+1: 3334858
Distance from start of the gene: 51
Sequence: attcacactctttacaggaactttttagagcaataggccatcaggagtatagtgatgctcGacagaagaagtgttctgaat
Evidence: [TIM]
Reference(s): [1] Salscheider SL., et al., 2014
TF binding sites (TFBSs)
[RcsB-BglJ,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal RcsB-BglJ activator sfsBp 3334781 3334801 -67.5 ggatgtgcatCTTTATATATTCTGAATATTCacactcttta nd [AIBSCS], [GEA] [1]


Evidence    

 [TIM] Transcription initiation mapping

 [AIBSCS] Automated inference based on similarity to consensus sequences

 [GEA] Gene expression analysis


Reference(s)    

 [1] Salscheider SL., Jahn A., Schnetz K., 2014, Transcriptional regulation by BglJ-RcsB, a pleiotropic heteromeric activator in Escherichia coli., Nucleic Acids Res 42(5):2999-3008

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