RegulonDB RegulonDB 10.8: Operon Form
   

gspCDEFGHIJKLMO operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: gspCDEFGHIJKLMO
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: gspCDEFGHIJKLMO
Gene(s): gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: gspCp1
+1: 3455482
Distance from start of the gene: 96
Sequence: attatccttaatcataaaaataatgtatgtatttattaattaaatacatattactaatatAaataaattttgcttgattca
Evidence: [TIM]
Reference(s): [1] Francetic O., et al., 2000


Transcription unit          
Name: gspCDEFGHIJKLMO
Gene(s): gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: gspCp2
+1: 3455527
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 51
Sequence: acatattactaatataaataaattttgcttgattcatgcaagcggcattaatactatttaTactaacgtcaatatacaacc
                             -35                    -10     +1                   
Evidence: [HIPP]
[TIM]
Reference(s): [1] Francetic O., et al., 2000
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd H-NS repressor gspCp2 nd nd nd nd nd [BPP], [GEA] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal SlyA activator gspCp2 3455472 3455483 -49.5 taaatacataTTACTAATATAAataaattttg nd [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] [2]


Transcription unit          
Name: gspCDEFGHIJKLMO
Gene(s): gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: gspCp3
+1: 3455531
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 47
Sequence: attactaatataaataaattttgcttgattcatgcaagcggcattaatactatttatactAacgtcaatatacaacccacc
                                -35                    -10  +1                   
Evidence: [HIPP]
[TIM]
Reference(s): [1] Francetic O., et al., 2000
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote Fur-Fe2+ repressor gspCp3 3455677 3455695 156.0 gattatttttAATGTGAATTATTTCCATAcaactatagt nd [APIORCISFBSCS], [BPP] [3]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd H-NS repressor gspCp3 nd nd nd nd nd [BPP], [GEA] [1]





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