RegulonDB RegulonDB 10.10: Operon Form

tsgA operon and associated TUs in Escherichia coli K-12 genome

Name: tsgA
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: tsgA
Gene(s): tsgA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Name: tsgAp
+1: 3492519
Distance from start of the gene: 49
Sequence: tttagcaaccgattgcaataaaacatttaaacagatcacaaaatcacctaaaatcgcccgCtcgcggcatatcccgctatg
Evidence: [HTTIM]    
Reference(s): [1] Mendoza-Vargas A., et al., 2009
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal NsrR repressor tsgAp 3492450 3492461 -64.0 atcacctcttAAAATGCAATTTagcaaccgat nd [GEA], [APIORCISFBSCS] [2]

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -6.1 3492524 3492541 cccgctcgcgGCATATCCCGCTATGCCattttatttt
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"