Name: |
fadH |
Gene(s): |
fadH
Genome Browser
M3D Gene expression
COLOMBOS
|
Note(s): |
Repression of fadH transcription by the ArcAB system is additive to FadR repression under anaerobic conditions Feng Y,2010 |
Evidence: |
[ICWHO] Inferred computationally without human oversight |
Promoter |
|
Name: |
fadHp |
+1: |
3231624 |
Distance from start of the gene: |
41
|
Sequence: |
ccatcacaaaccccgcactccccttttcccttttctccggcgacggctaaattagaactcAtccgaccacataacaattat
|
Note(s): |
The CRP-cAMP complex activates the fadH promoter; however, the absence of CRP-cAMP reduces the repression of fadH expression by FadR and ArcA-ArcB. This suggests that HipB may regulate fadH expression in cooperation with other DNA-binding proteins Lin CY,2013 |
Evidence: |
[TIM]
|
Reference(s): |
[1] Feng Y., et al., 2010
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
HipB |
repressor |
fadHp |
3231474
|
3231510
|
-132.5
|
gtggacgcctTATCCGCCCTACATGTGCAATTCCGTAACCTGGATAAaacgcgacaa
|
[GEA]
|
[2]
|
CRP-cyclic-AMP |
activator |
fadHp |
3231552
|
3231573
|
-61.5
|
ccgggcgtatTCTTTTTGAATCCCATCACAAAccccgcactc
|
[GEA]
|
[1]
|
FadR |
repressor |
fadHp |
3231619
|
3231635
|
4.0
|
gctaaattagAACTCATCCGACCACATaacaattatt
|
[GEA]
|
[1], [3]
|
ArcA-phosphorylated |
repressor |
fadHp |
3231635
|
3231649
|
19.0
|
tccgaccacaTAACAATTATTTTACatactggaca
|
[EME], [GEA]
|
[1], [3], [4]
|