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Name: | murQP | |||||||||
Gene(s): | murQ, murP Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | murR and murQ are divergently orientated and expressed from nonoverlapping face-to-face (convergent) promoters, and their transcripts are complementary at the 5' end. CRP controls positively murQP expression and it also may affect murR transcription as a consequence of this unusual promoter arrangement (face-to-face) Jaeger T,2008 | |||||||||
Evidence: | [PAGTSBP] Products of adjacent genes in the same biological process | |||||||||
Reference(s): | [1] Jaeger T., et al., 2008 | |||||||||
Promoter | ||||||||||
Name: | murQp1 | |||||||||
+1: | 2545733 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 40 | |||||||||
Sequence: |
tgcgagtgtagactcaatgattcctttaagcctgtcaattcgggatatatgattccatacAtctgcaattatttgatcgta -35 -10 +1 |
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Evidence: |
[ICWHO] [IHBCE] [RS-EPT-CBR] [TIM] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [1] Jaeger T., et al., 2008 [3] Maciag A., et al., 2011 [4] Salgado H, et al., 2012 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | activator | murQp1 | 2545651 | 2545672 | -71.5 | ccgcttaagtTCTTATGACGCTCTTCACACTCtgcgagtgta | nd | [GEA], [AIBSCS], [BPP] | [1] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | MurR | repressor | murQp1 | 2545682 | 2545697 | -44.0 | ctgcgagtgtAGACTCAATGATTCCTttaagcctgt | nd | [GEA], [BPP], [ICWHO] | [1] |
proximal | MurR | repressor | murQp1 | 2545714 | 2545729 | -12.0 | ctgtcaattcGGGATATATGATTCCAtacatctgca | nd | [GEA], [BPP], [ICWHO] | [1] |
Name: | murQP | |||||||||
Gene(s): | murQ, murP Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | murR and murQ are divergently orientated and expressed from nonoverlapping face-to-face (convergent) promoters, and their transcripts are complementary at the 5' end. CRP controls positively murQP expression and it also may affect murR transcription as a consequence of this unusual promoter arrangement (face-to-face) Jaeger T,2008 | |||||||||
Evidence: | [PAGTSBP] Products of adjacent genes in the same biological process | |||||||||
Reference(s): | [1] Jaeger T., et al., 2008 | |||||||||
Promoter | ||||||||||
Name: | murQp | |||||||||
+1: | 2545733 | |||||||||
Sigma Factor: | Sigma38 Sigmulon | |||||||||
Distance from start of the gene: | 40 | |||||||||
Sequence: |
tgcgagtgtagactcaatgattcctttaagcctgtcaattcgggatatatgattccatacAtctgcaattatttgatcgta -35 -10 +1 |
|||||||||
Evidence: |
[ICWHO] [IHBCE] [RS-EPT-CBR] [TIM] |
|||||||||
Reference(s): |
[2] Huerta AM., et al., 2003 [1] Jaeger T., et al., 2008 [3] Maciag A., et al., 2011 [4] Salgado H, et al., 2012 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | activator | murQp | 2545651 | 2545672 | -71.5 | ccgcttaagtTCTTATGACGCTCTTCACACTCtgcgagtgta | nd | [GEA], [AIBSCS], [BPP] | [1] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | MurR | repressor | murQp | 2545682 | 2545697 | -44.0 | ctgcgagtgtAGACTCAATGATTCCTttaagcctgt | nd | [GEA], [BPP], [ICWHO] | [1] |
proximal | MurR | repressor | murQp | 2545714 | 2545729 | -12.0 | ctgtcaattcGGGATATATGATTCCAtacatctgca | nd | [GEA], [BPP], [ICWHO] | [1] |
Name: | murQP | |||||||||
Gene(s): | murQ, murP Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | murR and murQ are divergently orientated and expressed from nonoverlapping face-to-face (convergent) promoters, and their transcripts are complementary at the 5' end. CRP controls positively murQP expression and it also may affect murR transcription as a consequence of this unusual promoter arrangement (face-to-face) Jaeger T,2008 | |||||||||
Evidence: | [PAGTSBP] Products of adjacent genes in the same biological process | |||||||||
Reference(s): | [1] Jaeger T., et al., 2008 | |||||||||
Promoter | ||||||||||
Name: | murQp2 | |||||||||
+1: | 2545741 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 32 | |||||||||
Sequence: |
tagactcaatgattcctttaagcctgtcaattcgggatatatgattccatacatctgcaaTtatttgatcgtaaatagtaa -35 -10 +1 |
|||||||||
Evidence: |
[ICWHO] [IHBCE] [TIM] |
|||||||||
Reference(s): |
[2] Huerta AM., et al., 2003 [1] Jaeger T., et al., 2008 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | activator | murQp2 | 2545651 | 2545672 | -79.5 | ccgcttaagtTCTTATGACGCTCTTCACACTCtgcgagtgta | nd | [AIBSCS], [BPP], [GEA], [AIBSCS], [BPP] | [1] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | MurR | repressor | murQp2 | 2545682 | 2545697 | -52.0 | ctgcgagtgtAGACTCAATGATTCCTttaagcctgt | nd | [BPP], [GEA], [ICWHO], [BPP], [ICWHO] | [1] |
proximal | MurR | repressor | murQp2 | 2545714 | 2545729 | -20.0 | ctgtcaattcGGGATATATGATTCCAtacatctgca | nd | [BPP], [GEA], [BPP], [ICWHO] | [1] |
Name: | murQP-yfeW |
Gene(s): | murQ, murP, yfeW Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ICWHO] Inferred computationally without human oversight [ITCR] Inferred through co-regulation |
Reference(s): | [3] Maciag A., et al., 2011 |
Reference(s) |
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