RegulonDB RegulonDB 10.8: Operon Form
   

yefM-yoeB operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yefM-yoeB
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: yefM-yoeB
Gene(s): yoeB, yefM   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: yefMp
+1: 2089733
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 20
Sequence: ccttgatctacaaactaattaataaatagttaattaacgctcatcattgtacaatgaactGtacaaaagaggagattgaca
                             -35                  -10       +1                   
Evidence: [CV(RS-EPT-CBR)]
[CV(TIM)]
[RS-EPT-CBR]
[TIM]
Reference(s): [1] Kedzierska B., et al., 2007
[2] Salgado H, et al., 2012
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal YefM repressor yefMp 2089725 2089739 2.5 cattgtacaaTGAACTGTACAAAAGaggagattga nd [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] [1]
proximal YefM repressor yefMp 2089737 2089751 -10.5 attaacgctcATCATTGTACAATGAactgtacaaa nd [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal YefM-YoeB repressor yefMp 2089725 2089739 2.5 cattgtacaaTGAACTGTACAAAAGaggagattga nd [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] [1]
proximal YefM-YoeB repressor yefMp 2089737 2089751 -10.5 attaacgctcATCATTGTACAATGAactgtacaaa nd [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] [1]





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