RegulonDB RegulonDB 10.7: Operon Form
   

thiMD operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: thiMD
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Gene(s): thiD, thiM   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: thiMp
+1: 2185451
Distance from start of the gene: 150
Sequence: attgtaaaactgccgtttttcctcgtttacaacgcgtgcgctggacattaccatcctcctCtgcgatttatcatcgcaacc
Evidence: [HTIM]
Reference(s): [1] Mendoza-Vargas A., et al., 2009


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: reverse
Evidence: [ICA] Inferred by computational analysis
Reference(s): [2] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -8.5 2185305 2185332 caccaggtcaTTGCTTCTTCACGTTATGGCAGGAGCAaactatgcaa
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"
REGULATION, RNA cis-regulatory element:  
Rfam type: Cis-reg; riboswitch
Strand: reverse
Evidence: [ICA] Inferred by computational analysis
Reference(s): [3] null null
  Description Rfam score Left Pos Right Pos Sequence (RNA-strand)
  TPP riboswitch (THI element) 66.9 2185336 2185432 aucaucgcaaCCAAACGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUCACGGACCACCAGGucauugcuuc
Notes: "The provied "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appears as the reverse complement of the sequence delimited by LeftPos-RightPos"





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