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|
| Operon |  |
|---|---|
| Name: | rplY |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Gene(s): | rplY Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | The G/C-rich discriminator sequence is located just downstream from the -10 box in the rplY promoter, suggesting possible negative regulation by ppGpp during the stringent response Aseev LV,2015 |
| Evidence: | [ICWHO] Inferred computationally without human oversight |
| Reference(s): | [1] Uemura Y., et al., 1991 |
| Promoter | |
| Name: | rplVp |
| +1: | 2282440 |
| Sigma Factor: | Sigma70 Sigmulon |
| Distance from start of the gene: | 77 |
| Sequence: |
attacgcggttaatggtagttttgattgatgtataaggcgattgagtatagaatctcgccCgcttttgcatacgcaaagca -35 -10 +1 |
| Evidence: | [AIPP] |
| Reference(s): | [2] Aseev LV., et al., 2015 |
| Terminator(s) | |
| Type: | rho-independent |
| Sequence: | ttgtaaaaaaCCCCGCTCCGGCGgggttttttg |
| Reference(s): | [2] Aseev LV., et al., 2015 |
| Evidence: | [GEA] Gene expression analysis |
| Reference(s): | [2] Aseev LV., et al., 2015 |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Translational |
| Strand: | forward |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -12.8 | 2282470 | 2282495 | gatcacttacCTGTTGCTGGGTCGCCTGTAGCAGGattaatttaa |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
| Reference(s) |
|
|---|---|
[AIPP] Automated inference of promoter position