RegulonDB RegulonDB 10.8: Operon Form
   

sodC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: sodC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: sodC
Gene(s): sodC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
[LTED] Length of transcript experimentally determined
Reference(s): [1] Imlay KR., et al., 1996
Promoter
Name: sodCp
+1: 1724679
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 24
Sequence: gtaagcacttttaggaatagccgccgttcaaaaatgtgtcactggtttacacttattcagGaatgcacaatgaacggaggt
                       -35                 -10              +1                   
Evidence: [CV(TIM)]
[HTIM]
[TIM]
Reference(s): [1] Imlay KR., et al., 1996
[2] Mendoza-Vargas A., et al., 2009


Evidence    

 [CV(TIM)] cross validation(TIM)

 [HTIM] High-throughput transcription initiation mapping

 [TIM] Transcription initiation mapping


Reference(s)    

 [1] Imlay KR., Imlay JA., 1996, Cloning and analysis of sodC, encoding the copper-zinc superoxide dismutase of Escherichia coli., J Bacteriol 178(9):2564-71

 [2] Mendoza-Vargas A., Olvera L., Olvera M., Grande R., Vega-Alvarado L., Taboada B., Jimenez-Jacinto V., Salgado H., Juarez K., Contreras-Moreira B., Huerta AM., Collado-Vides J., Morett E., 2009, Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli., PLoS One 4(10):e7526

RegulonDB