RegulonDB RegulonDB 10.8: Operon Form
   

nadE operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: nadE
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: nadE
Gene(s): nadE   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
[LTED] Length of transcript experimentally determined
Reference(s): [1] De Lay N., et al., 2009
Promoter
Name: nadEp
+1: 1822302
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 156
Sequence: catattcttgttcatattccgtcctcttgtttatcagcgtgttagataagcctggaatacAttgggcgctttttcaagccc
                 -35                       -10              +1                   
Evidence: [HIPP]
[TIM]
Reference(s): [2] Allibert P., et al., 1987


Regulation by sRNA    
  Small RNA name (Regulator) Regulation type Mechanism Function Binding Sites Evidence Reference
LeftPos RightPos Sequence (RNA-strand)
  cyaR antisense post-transcriptional regulation repressor 1822447 1822460 GAGGGGTTCAATG [IMP] [1]
Notes: "The provided sequence is that of the RNA strand,i.e. 'U's are showed instead the 'T'"


Evidence    

 [HIPP] Human inference of promoter position

 [TIM] Transcription initiation mapping


Reference(s)    

 [1] De Lay N., Gottesman S., 2009, The Crp-activated small noncoding regulatory RNA CyaR (RyeE) links nutritional status to group behavior., J Bacteriol 191(2):461-76

 [2] Allibert P., Willison JC., Vignais PM., 1987, Complementation of nitrogen-regulatory (ntr-like) mutations in Rhodobacter capsulatus by an Escherichia coli gene: cloning and sequencing of the gene and characterization of the gene product., J Bacteriol 169(1):260-71

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