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Name: | yeaR-yoaG |
Gene(s): | yoaG, yeaR Genome Browser M3D Gene expression COLOMBOS |
Note(s): | Derrick et al. (2009) proposed that under conditions where Fis levels are raised, Fis binds at the yeaR promoter and prevents nitrate-dependent induction by blocking NarL binding to its target Squire DJ,2009 NarL activates the yeaR promoter independently of FNR Lin HY,200719245365]|. Based on an EMSA experiment, it was shown that purified FNR has no specific DNA site for FNR on the yeaR promoter Squire DJ,2009 Based on experiments utilizing a mutant background, it was shown that NarP plays little or no role in the yeaR promoter region Squire DJ,2009 |
Evidence: | [ICWHO] Inferred computationally without human oversight |
Promoter | |
Name: | yeaRp |
+1: | 1879994 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 46 |
Sequence: |
gctaaaaagtaaccaataaatggtatttaaaatgcaaattatcaggcgtaccctgaaacgGctggaataaaccgttttcag -35 -10 +1 |
Evidence: | [TIM] |
Reference(s): | [1] Lin HY., et al., 2007 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | Fis | repressor | yeaRp | 1880018 | 1880032 | -31.0 | ccaataaatgGTATTTAAAATGCAAattatcaggc | nd | [BPP] | [2] |
proximal | Fis | repressor | yeaRp | 1880042 | 1880056 | -55.0 | cgctgatatgGTGCTAAAAAGTAACcaataaatgg | nd | [BPP] | [2] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | NarL-Phosphorylated | activator | yeaRp | 1880025 | 1880040 | -39.0 | aaaagtaaccAATAAATGGTATTTAAaatgcaaatt | nd | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1], [2] |
proximal | NarL-Phosphorylated | activator | yeaRp | 1880034 | 1880049 | -48.0 | atggtgctaaAAAGTAACCAATAAATggtatttaaa | nd | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1], [2] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | NarP-Phosphorylated | activator | yeaRp | 1880025 | 1880040 | -39.0 | aaaagtaaccAATAAATGGTATTTAAaatgcaaatt | nd | [AIBSCS], [CV(GEA)], [GEA] | [1] |
proximal | NarP-Phosphorylated | activator | yeaRp | 1880034 | 1880049 | -48.0 | atggtgctaaAAAGTAACCAATAAATggtatttaaa | nd | [AIBSCS], [CV(GEA)], [GEA] | [1] |
Reference(s) |
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