RegulonDB RegulonDB 10.8: Operon Form
   

ynbABCD operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ynbABCD
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ynbABCD
Gene(s): ynbA, ynbB, ynbC, ynbD   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: ynbAp
+1: 1477597
Distance from start of the gene: 24
Sequence: atttttaatgaaacggcgtgttgcgatatctccgtcaggggaattgatgcaccatagcgcAaaccgaattatcaaggattg
Evidence: [TIM]
Reference(s): [1] Salscheider SL., et al., 2014
TF binding sites (TFBSs)
[RcsB-BglJ,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal RcsB-BglJ activator ynbAp 1477522 1477542 -65.5 tccccaatacCTTGATATATTCTGAATTTTTaatgaaacgg nd [AIBSCS], [CV(GEA)], [GEA] [1]


Evidence    

 [TIM] Transcription initiation mapping

 [AIBSCS] Automated inference based on similarity to consensus sequences

 [CV(GEA)] cross validation(GEA)

 [GEA] Gene expression analysis


Reference(s)    

 [1] Salscheider SL., Jahn A., Schnetz K., 2014, Transcriptional regulation by BglJ-RcsB, a pleiotropic heteromeric activator in Escherichia coli., Nucleic Acids Res 42(5):2999-3008

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